Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1128 ATGGCTCATCAGCTGATACGCCCCCTGAGGCAGTGGCCGAGATTGCAGTACCACTGCATCTTTACCCCGACACTCCATCATTCTCTCTCCTCCCCTTCACTCTTCTCCACCAAAGCCATCTCCCACCTTCTCTCATTCACCAAGCCTCCATCTCTTCATAGCAACCGCCATTTCCGATCGTACGGTCTCAGATTGCCGAACGATCCGGCGCCGTCACATCTCCAAGAAACCGCCGGCGAGCAGGATTCCGATGCCAAAAGGAGCCGCAACGAAAGGAAGCGAGAAGCTCGGCGCGCCGTCCGTTGGGGGATGGAACTCGCGGCCTTCTCAACCCCTCAAATCAAACGAATTCTCAGAATGGCTTCGCTTGAGAGAGAAGTCTTCGATGCTCTCATGTTGGTCAAGAGACTAGGGCCTGACGTCCGTGAAGGAAAGCGGAGACAGTTCAATTATATAGGAAGACTGCTAAGGGGAGTGCAACCTGAATTGATGGATGCTTTGATCCAGGCTTCAAAAGATGGTGACCAGAGTAGGCTGCAGGCTTTATCTGGTCTAGATACAAGGGTTGTTGAGGAGGATGGCGAAGAAGATGAAGCAAACGAAGAAGATTATGAGGAGGAAGATGAGGAATCTAATACCTACATTGACATAGCAACCAGATGGTCTGACGGGCTAATCAATAAGGACATTGATGTTACCAATGAAGTTTATTCAGTTCAGAGTGTTGAGTTTGATCGTCAGGAGTTGCGTAAACTTGTACGGAAAGTGCACTCAATTCAAGGCCATCAAGCCATTATCAAGGAAGAAGAAGACGTGGCGCTACTTGGTGCAAAAAAGTCCCTATTCCAATTCCTTTACACCCTTGCAAAGCAGTTGCCAACTGAATAA 888 49.1 MAHQLIRPLRQWPRLQYHCIFTPTLHHSLSSPSLFSTKAISHLLSFTKPPSLHSNRHFRSYGLRLPNDPAPSHLQETAGEQDSDAKRSRNERKREARRAVRWGMELAAFSTPQIKRILRMASLEREVFDALMLVKRLGPDVREGKRRQFNYIGRLLRGVQPELMDALIQASKDGDQSRLQALSGLDTRVVEEDGEEDEANEEDYEEEDEESNTYIDIATRWSDGLINKDIDVTNEVYSVQSVEFDRQELRKLVRKVHSIQGHQAIIKEEEDVALLGAKKSLFQFLYTLAKQLPTE* 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12457244 12463240 + Vvi18g1128 Vvi18g1128 780831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1128 295 MobiDBLite consensus disorder prediction 79 97 - -
Vvi18g1128 295 MobiDBLite consensus disorder prediction 186 211 - -
Vvi18g1128 295 Pfam Protein of unknown function (DUF615) 86 285 IPR006839 -
Vvi18g1128 295 MobiDBLite consensus disorder prediction 190 211 - -
Vvi18g1128 295 MobiDBLite consensus disorder prediction 58 97 - -
Vvi18g1128 295 Gene3D - 96 176 IPR023153 -
Vvi18g1128 295 SUPERFAMILY PSPTO4464-like 98 288 IPR023153 -
Vvi18g1128 295 CDD YjgA-like 88 285 IPR006839 -
Vvi18g1128 295 PANTHER OSJNBB0026I12.6 PROTEIN 1 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1128 - - - vvi:100248885 529.635
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1128 . . . . . . . Bma01g02373 . . . Cma09g00099 . . . Cpe06g00062 . . . . . . . . . . . . . . . Cone4ag1977 Cone7ag1895 . . Lsi04g01753 Csa03g04287 Chy04g00410 . . . . . . . . . Sed01g2480 . Cmo09g00096 . . . Car09g00087 . . Bhi09g02078 Tan01g5032 Cmetu04g0766 . . . . Cla05g01864 Cam05g1993 Cec05g2005 Cco05g2063 Clacu05g1985 Cmu05g1866 Cre05g1990 . . . Cme04g00461
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010806 0 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 32