Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1130 ATGGCTAAGTTATCAATAATGTTAATTTCTGTGTTCACAATTACTATTCATCATTTGTGGATACCAGGAGTGTTATCAGCAACTTACACTATAGTAAACAAATGCGACCAAACGGTATGGCCGGGCATTCTTTCAAACTCTGATTCAGCACAGCTCTCAACCACTGGTTTTACCCTTCAGAAAGGCGAGTCCAAGACCATAACGGTGCCTTCCTCATGGGGCGGTCGCTTCTGGGGCAGGACCCATTGTACCCAAGACTCTACCGGAAAGTTCTCTTGTGTCACCGGTGACTGCGGATCCGGAAAGCTAGAATGCGCAGGTGGTGGCGCTGCTCCCCCTGCTACACTTGCGGAGTTTAAGCTCAACGGCTACGGAGGCCTCGACTTCTACGACGTGAGCTTGGTTGATGGGTATAACCTTCCTTTGATGGTGGTCCCACAGGGCGGCACCGGGGGGAACTGTACCAAAACCGGGTGCGAGGTGGATCTGAACGGCGCTTGCCCCTCTGAGCTCAAGGTTACGAGCACCGACGGAAAAGAGAACGTTGCGTGCAAGAGCGCGTGCGAGGCGTTCCGGGAACCTCAATACTGCTGCAGCGGCGCCTATGCGACTCCCGATAAGTGCACTCCCTCTTCGTACTCTCAGCTGTTCAAGAGCGCATGCCCACGCGCTTACAGCTACGCATACGACGATTCCACCAGCACATTCACTTGTGCCGGCGCAGATTACATGATCACCTTCTGCCCCTCTCCTAAAACCAGCCAGAAAGCATCGCAAGGGCAGAACGAGGAAACGCCGGCGACGACTCAGATCAACAGCACAATGGTGTACGAAGGCGCTCTAGAGGATGACAGCTCTTCAGCGTCACCCCCCACGTGTACAGGATCAGGACTGATTGCCGGTGCCGTATCCATCGGGACCGCTCTTCTAACTTCCTGGCTGACCTTATAG 951 53.94 MAKLSIMLISVFTITIHHLWIPGVLSATYTIVNKCDQTVWPGILSNSDSAQLSTTGFTLQKGESKTITVPSSWGGRFWGRTHCTQDSTGKFSCVTGDCGSGKLECAGGGAAPPATLAEFKLNGYGGLDFYDVSLVDGYNLPLMVVPQGGTGGNCTKTGCEVDLNGACPSELKVTSTDGKENVACKSACEAFREPQYCCSGAYATPDKCTPSSYSQLFKSACPRAYSYAYDDSTSTFTCAGADYMITFCPSPKTSQKASQGQNEETPATTQINSTMVYEGALEDDSSSASPPTCTGSGLIAGAVSIGTALLTSWLTL* 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12468308 12470528 + Vvi18g1130 Vvi18g1130 780833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1130 316 Gene3D Thaumatin 27 249 IPR037176 -
Vvi18g1130 316 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 8 260 - -
Vvi18g1130 316 SMART tha2 29 249 IPR001938 -
Vvi18g1130 316 CDD TLP-PA 28 248 - -
Vvi18g1130 316 SUPERFAMILY Osmotin, thaumatin-like protein 28 250 IPR037176 -
Vvi18g1130 316 Pfam Thaumatin family 33 249 IPR001938 -
Vvi18g1130 316 ProSitePatterns Thaumatin family signature. 89 105 IPR017949 -
Vvi18g1130 316 PRINTS Pathogenesis-related protein signature 28 40 IPR001938 -
Vvi18g1130 316 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Vvi18g1130 316 PRINTS Pathogenesis-related protein signature 128 144 IPR001938 -
Vvi18g1130 316 PRINTS Pathogenesis-related protein signature 239 248 IPR001938 -
Vvi18g1130 316 PIRSF PR5 1 286 IPR001938 -
Vvi18g1130 316 PANTHER OS03G0233200 PROTEIN 8 260 IPR001938 -
Vvi18g1130 316 ProSiteProfiles Thaumatin family profile. 26 249 IPR001938 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi3g138 Vvi18g1130 ECH
Vvi4g1121 Vvi18g1130 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1130 - - vvi:100257373 641.343