Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1132 ATGAGGAAGTGGACGATCCCTTCCGCTCTGCTTTTGCTATGCCTTCTCTGCCTTCTTCCAGATCAAGGGCGGAAGATACACGCCAATGCAGAAGCTGATTCTGAAGAGTTGGTGAATCCACCAAAGGTTGAAGAGAAAATTGGAGCTGTTCCAAATGGTTTATCCACTGATTCTGATGTCGCAAAGAGGGAAGCTGAGTCTATCTCCAAAAGAAATCTCCGTGCCAATGCGGAGAAGTTTGAGTTTCAGGCTGAGGTGTCTCGGCTCATGGATATCATTATCAACTCTCTTTATAGCAACAAAGACATTTTCTTAAGGGAGTTGATCTCCAATGCTTCTGATGCACTGGATAAGATTAGGTTCCTTTCCCTCACAGATAAGGAGATTTTAGGTGAAGGTGATACTGCAAAGCTTGATATCCAGATTAAATTAGACAAGGAAAAGAAAATCCTGTCAATTCGTGATAGAGGTATAGGTATGACAAAGGATGATTTAATCAAGAACTTAGGAACAATCGCAAAATCTGGAACGTCAGCTTTTGTGGAGAAAATGCAAACCAGTGGGGATCTTAATCTCATTGGACAATTTGGAGTTGGGTTCTACTCTGTATATCTTGTTGCAGACTATGTTGAAGTCATTAGCAAACACAATGATGACAAACAGTATGTATGGGAGTCTAAAGCTGATGGAGCTTTTGCAATTTCTGAGGATGTATGGAATGAACCACTCGGACGTGGAACTGAGATCAGATTGCATCTCAGAGAAGAAGCTGGGGAATACTTGGAGGAGGCCAAATTAAAGGAGTTAGTGAAAAGATATTCTGAATTCATCAACTTTCCCATATACCTCTGGGCAAGCAAAGAGGTTGATGTAGAGGTACCTGCAGATGAAGATGAGTCAAGTGATGAAGAAGAAACATCTGACAGCAGCTCTTCTGAGGAAGAAGTGGAAGATGAAGATGCTGAGAAAAAACCCAAATCAAAAACAGTGAAGGAAACCACTTATGAGTGGGAGCTTTTGAATGATGTGAAGGCTATATGGTTACGGAATCCAAAGGAGGTGACGGAGGAAGAGTACACAAAATTCTACCAGTCTCTAGCTAAGGATTTTAGTGAAGAGAAGCCTCTATCATGGAGTCACTTCACCGCTGAAGGTGATGTGGAGTTCAAGGCTGTTTTGTTTGTGCCTCCTAAGGCTCCTCAGGATCTATATGAGAGTTACTATAACACCAAGAAATCCAACTTGAAGTTGTATGTTAGACGTGTATTCATTTCTGAAGAATTTGATGAGCTTTTGCCCAAGTATCTGAACTTTTTGAAGGGTCTTGTAGATTCCGACACGTTACCTCTTAATGTTTCACGAGAAATGCTTCAACAACACAGCAGTTTGAAAACAATTAAGAAGAAGCTTATCCGCAAGGCCCTTGATATGATTCGTAAGATCGCCGATGAGGATCCTGATGAGTCTAATGATAAAGACAAGAAAGATGTTGAAAAGTCCAGTGATGATGATGAGAAGAAAGGTCAGTATGCAAAGTTCTGGAATGAGTTTGGCAAGTCCATAAAACTTGGTATTATTGAAGATGCATCCAACAGAAACCGCTTGGCCAAGCTTCTCAGATTTGAAAGCACAAAGTCAGGTGGCAAATTGGCTTCACTTGATCAATATATCTCAAGAATGAAACCAGGACAGAAGGATATCTTCTACATCACGGGTAACAGCAAGGAGCAATTGGAGAAGTCTCCATTCCTTGAGAGGCTTACAAAGAAGAATTATGAGGTTATTTTCTTTACTGACCCAGTGGATGAGTACCTGATGCAATACCTGATGGACTATGAAGACAAAAAATTCCAGAATGTGTCAAAGGAAGGCCTGAAACTTGGGAAGGACTCAAAAGATAAGGATCTTAAAGAGTCATTCAAAGATCTGACTAAATGGTGGAAGAGTGCTCTTGCCAGTGAGAATGTTGATGATGTGAAAATAAGCAACCGTCTGGCTGACACTCCTTGTGTGGTTGTTACATCAAAATATGGATGGAGTGCAAACATGGAGAGAATCATGCAATCACAGACTCTTTCAGATGCCAGCAAGCAAGCATATATGCGTGGCAAGAGGGTGCTTGAGATAAACCCAAGGCATCCGATCATCAAGGAGCTTCAGGAAAGAGTAGTAAAGGACAGTGAGGATGAGGGCGTAAAGAAAACAGCACAGCTCATGTACCAAACAGCACTCATGGAGAGTGGTTTCCTGCTCAGTGACCCCAAGCATTTTGCCTCTAATATCTATGATTCAGTGAAGTCAAGCCTAAACATCAGCCCTGATGCAGCAGTGGAAGAGGAAGATGAAGCAGAGGAGGCTGAGGCTGAGGCTGAGGCTGAGGCAGAATCGAAAGAAGCTTCCACTTCCAAGGGTGATGATGCTGCTGCTGATGCAGACACACTCAAGGATGAGTTGTAG 2457 42.25 MRKWTIPSALLLLCLLCLLPDQGRKIHANAEADSEELVNPPKVEEKIGAVPNGLSTDSDVAKREAESISKRNLRANAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEILGEGDTAKLDIQIKLDKEKKILSIRDRGIGMTKDDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDVWNEPLGRGTEIRLHLREEAGEYLEEAKLKELVKRYSEFINFPIYLWASKEVDVEVPADEDESSDEEETSDSSSSEEEVEDEDAEKKPKSKTVKETTYEWELLNDVKAIWLRNPKEVTEEEYTKFYQSLAKDFSEEKPLSWSHFTAEGDVEFKAVLFVPPKAPQDLYESYYNTKKSNLKLYVRRVFISEEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIADEDPDESNDKDKKDVEKSSDDDEKKGQYAKFWNEFGKSIKLGIIEDASNRNRLAKLLRFESTKSGGKLASLDQYISRMKPGQKDIFYITGNSKEQLEKSPFLERLTKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDSKDKDLKESFKDLTKWWKSALASENVDDVKISNRLADTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELQERVVKDSEDEGVKKTAQLMYQTALMESGFLLSDPKHFASNIYDSVKSSLNISPDAAVEEEDEAEEAEAEAEAEAESKEASTSKGDDAAADADTLKDEL* 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12501748 12507830 - Vvi18g1132 Vvi18g1132 780835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1132 818 ProSitePatterns Heat shock hsp90 proteins family signature. 98 107 IPR019805 GO:0005524|GO:0006457|GO:0051082
Vvi18g1132 818 Pfam Hsp90 protein 259 795 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi18g1132 818 Coils Coil 776 803 - -
Vvi18g1132 818 SUPERFAMILY Ribosomal protein S5 domain 2-like 343 623 IPR020568 -
Vvi18g1132 818 Gene3D - 65 300 IPR036890 -
Vvi18g1132 818 MobiDBLite consensus disorder prediction 293 318 - -
Vvi18g1132 818 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 78 287 IPR036890 -
Vvi18g1132 818 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 19 799 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi18g1132 818 MobiDBLite consensus disorder prediction 772 818 - -
Vvi18g1132 818 Gene3D - 630 776 IPR037196 -
Vvi18g1132 818 PANTHER BNAA08G14800D PROTEIN 19 799 - -
Vvi18g1132 818 MobiDBLite consensus disorder prediction 482 504 - -
Vvi18g1132 818 MobiDBLite consensus disorder prediction 793 818 - -
Vvi18g1132 818 PIRSF HSP90_HTPG 51 809 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi18g1132 818 Gene3D - 342 535 - -
Vvi18g1132 818 SMART HKATPase_4 100 257 IPR003594 -
Vvi18g1132 818 Hamap Chaperone protein HtpG [htpG]. 75 766 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi18g1132 818 MobiDBLite consensus disorder prediction 293 329 - -
Vvi18g1132 818 CDD HATPase_Hsp90-like 87 277 - -
Vvi18g1132 818 PRINTS 90kDa heat shock protein signature 78 98 IPR020575 -
Vvi18g1132 818 PRINTS 90kDa heat shock protein signature 99 121 IPR020575 -
Vvi18g1132 818 PRINTS 90kDa heat shock protein signature 150 167 IPR020575 -
Vvi18g1132 818 PRINTS 90kDa heat shock protein signature 168 185 IPR020575 -
Vvi18g1132 818 PRINTS 90kDa heat shock protein signature 193 215 IPR020575 -
Vvi18g1132 818 PRINTS 90kDa heat shock protein signature 245 262 IPR020575 -
Vvi18g1132 818 PRINTS 90kDa heat shock protein signature 263 281 IPR020575 -
Vvi18g1132 818 Gene3D - 536 623 - -
Vvi18g1132 818 SUPERFAMILY HSP90 C-terminal domain 642 764 IPR037196 -
Vvi18g1132 818 MobiDBLite consensus disorder prediction 775 792 - -
Vvi18g1132 818 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 101 256 IPR003594 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1132 K09487 HSP90B, TRA1; heat shock protein 90kDa beta - vvi:100267648 1457.2
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1132 . . . . . . . . Cmo05g00316 Cmo12g00353 . . . Car12g00379 . . Cpe07g00357 Bhi04g02197 . . . . . . . . . . . . . Cone4ag1980 Cone7ag1897 . . . . . . . Blo18g00775 . Bda01g01534 Bpe02g01732 . Bma01g00723 . . . . . Cma05g00315 Car05g00261 . Cpe11g00262 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006598 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 3 1 1 1 1 1 1 1 1 2 1 1 38