Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1136 ATGGATTCAAGTTTCGTATTCGAAGTCCCCAGCGACGAAGAACCCGAGTACGAACCTGACGAGGATGAAGAAGAAGAAGAAGGAGAAGGAGAAGGAGCAGCACAGACCGCCTCTCAATCTCCATGGGACTTCGCTTCATACTCCGAGACTGTTGCCGAAGAACACGCTCGTCGAAGCACAACCTCAGTCGATTTCAAGATCTCCAAAGCGCTTGAGCAACGTCGTCTCCCAATCCCCAACCAAGACGATAGCTCCGAATCCGAATCTGACCACCAAGAGGATTATACGCCCGAAGACGCTGACGAGGCGGCCAGTGTCGGCGGTGACCGCAAGTCCTTCTTTGCTCCTGCTGATGGAGCTTCTTTTCATGCCAATTCGTTCTTGGAGCTTAACCTCTCTCGACCGTTGCTTCGAGCTTGCGAAGCTTTGGGATACACTAAACCCACCCCAATTCAGGCAGCCTGCATACCAATAGCTTTAACTGGGCGAGATATTTGTGGGAGCGCCATTACTGGCTCTGGCAAGACGGCTGCCTTTTCCTTACCTACATTAGAGAGGTTATTGTTCCGTCCAAAACGTGTGCAAGCAATCAGGGTCCTTGTTCTTACTCCAACCAGAGAGTTGGCTGTTCAGGTCCATAGTATGATGGAAAAACTCGCTCAATTTACTGATATCCGATGTTGCCTGATAGTTGGAGGGCTTTCATCAAAGATGCAAGAGACAGCTTTGAGATCAATGCCTGATGTTGTTGTGGCTACCCCGGGACGGATGATAGATCATTTACGCAATTCCATGTCTGTGGATTTGGAAGATCTTGCAGTTCTAATCCTTGATGAGGCAGATCGCCTTCTGGAGCTTGGATTTAATGCTGAAATTCGTGAACTGAGATGTTGCTATTTATACCTATCACATTTCAATACACTTGACTTCTATGTTCACTCACCTTCAACCCAGTCTACTTCTAACTTCAGGCATTGCTTTTCCCAACCTCTCTTCTTCTTTCTAAAGGCAGTCTTAAGGCGTTTTATCCAAATGAGGCGAAGTGTTAGCCTTGAGGTGGAACAAGGTGTAAGCTTCAACTTAAACAACAACAACAACAATAATAATAATGCTAAAGAAAAAAATATCAGAAATCAGAAAATTCTAAAAAACTTAGCCGCTGTAGTGACCAATAATCCCTTTATTTCTTCTTCTCAATCTCATCTTTCCTTTCCATTTAAAGGGTTAATTGGCTATGGCCTCGAGACTAATTTGCATAGTCTCGCCTTGACGAGCACAACTCTGTTACATGGGCTAGGCACAAATGTTGAGTTTGTTCGCTTATGTCCTAAACGGAGGCAGACCATGCTATTTTCAGCTACGATGACTGAAGAAGTTGATGAGCTAGTCAAGCTTTCTATGACCAAACCAATGCGCCTTGCTGCTGATCCATCCACGAAACGGCCAGCAACATTGACAGAAGAGGTGGTACGGATACGGCGAATGAGAGAAGTAAATCAGGAGGCAGTTCTTCTTGCGTTGTGCTCCAAGACCTTCACAGCAAAAGCGATTATCTTCAGTGGAACCAAACAAGCTGCACATAGGTTGAAGATTTTGTTTGGATTGGCTGGCTTTAAGGCTGCTGAGCTTCATGGAAATCTTACACAAGTCCAGCGTCTTGATGCTTTGGAACTTTTCAGGAAGCAGCAAGTTGATTTTTTGATTGCAACAGATGTTGCCGCTCGTGGACTTGACATAATTGGTGTTCAAACAGTTATAAACTATGCATGTCCTCGTGATCTTACCAGTTACGTTCATCGTGTTGGTCGTACAGCAAGGGCTGGTAGAGAAGGATATGCTGTTACATTTGTAACTGATAATGATAGATCTCTCTTGAAATCTATAGTGAAGAGAGCTGGTTCAAAGCTGAGGAGCCGAATTGTTGCAGAGCAATCTATAATTAAGTGGTCTCATATGATTGAACAAATGGAAGATCAAGTTGCTGCCATTCTCCAGGAAGAGAGGGAAGAGAGAATCCTCAGAAAAGCTGAAATGGAAGCAACAAAGGCTGAAAACATGATTGCCCATAAGGATGATATCTACTCACGCCCTAAAAGAACCTGGTTTGCAACAGAAAAGGAGAAGAAGTCTGTGGCAAAGGCAGCAAAGGATTCTCTAGAAAAGGAAAATGGTTCTGGGAATAATGTAATCAGTGCCCAACAAGCTGAAGACCTCAAAATGAAGGAAAAGAGGAAAAGAGAACGAGAGAAAAATTTGCCACGGAAGAAGCGGCGAAAACTGGAAGCAGCTAGAGAGAGATTGGAGGATGAAAATCAAATTCACAAGTTAAAAGAAGGGGGCAGGGAAAATAAGAAAGAAAAGGCTGGAATCTCACTTGTAGGCATAGGTTATAGACGGGCAAAAGCAGTGAAGGCTGTAAAGAAGGCACAAGATGCTGGCAAGATTGGGAGGAAGGCCAATAAAAAATCAGAACGGCCTTCTCAAACAAATCAATCAAGGACAGAAGAGATGCAGGAGCTGTTCCAGAGTGACATGAGTGAGAGAAAGCAGAAAAGAAGCATTCGTGGTGCTGGAAAGAAAAAGTCCAAGAATTCATTTAAAAGCAAGTCACGATACAAGCGCAAGTAA 2628 44.14 MDSSFVFEVPSDEEPEYEPDEDEEEEEGEGEGAAQTASQSPWDFASYSETVAEEHARRSTTSVDFKISKALEQRRLPIPNQDDSSESESDHQEDYTPEDADEAASVGGDRKSFFAPADGASFHANSFLELNLSRPLLRACEALGYTKPTPIQAACIPIALTGRDICGSAITGSGKTAAFSLPTLERLLFRPKRVQAIRVLVLTPTRELAVQVHSMMEKLAQFTDIRCCLIVGGLSSKMQETALRSMPDVVVATPGRMIDHLRNSMSVDLEDLAVLILDEADRLLELGFNAEIRELRCCYLYLSHFNTLDFYVHSPSTQSTSNFRHCFSQPLFFFLKAVLRRFIQMRRSVSLEVEQGVSFNLNNNNNNNNNAKEKNIRNQKILKNLAAVVTNNPFISSSQSHLSFPFKGLIGYGLETNLHSLALTSTTLLHGLGTNVEFVRLCPKRRQTMLFSATMTEEVDELVKLSMTKPMRLAADPSTKRPATLTEEVVRIRRMREVNQEAVLLALCSKTFTAKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQQVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKSIVKRAGSKLRSRIVAEQSIIKWSHMIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKDDIYSRPKRTWFATEKEKKSVAKAAKDSLEKENGSGNNVISAQQAEDLKMKEKRKREREKNLPRKKRRKLEAARERLEDENQIHKLKEGGRENKKEKAGISLVGIGYRRAKAVKAVKKAQDAGKIGRKANKKSERPSQTNQSRTEEMQELFQSDMSERKQKRSIRGAGKKKSKNSFKSKSRYKRK* 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12545222 12566131 + Vvi18g1136 Vvi18g1136 780839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1136 875 MobiDBLite consensus disorder prediction 825 839 - -
Vvi18g1136 875 Gene3D - 89 320 IPR027417 -
Vvi18g1136 875 MobiDBLite consensus disorder prediction 713 767 - -
Vvi18g1136 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 624 IPR027417 -
Vvi18g1136 875 MobiDBLite consensus disorder prediction 853 875 - -
Vvi18g1136 875 Coils Coil 732 752 - -
Vvi18g1136 875 Pfam Helicase conserved C-terminal domain 504 608 IPR001650 -
Vvi18g1136 875 MobiDBLite consensus disorder prediction 1 110 - -
Vvi18g1136 875 MobiDBLite consensus disorder prediction 7 31 - -
Vvi18g1136 875 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 647 IPR001650 -
Vvi18g1136 875 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 276 284 IPR000629 -
Vvi18g1136 875 Coils Coil 666 686 - -
Vvi18g1136 875 Gene3D - 429 476 IPR027417 -
Vvi18g1136 875 PANTHER RNA HELICASE 37 256 - -
Vvi18g1136 875 PANTHER RNA HELICASE 431 829 - -
Vvi18g1136 875 Coils Coil 757 777 - -
Vvi18g1136 875 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 473 IPR014001 -
Vvi18g1136 875 Gene3D - 477 642 IPR027417 -
Vvi18g1136 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 440 629 IPR027417 -
Vvi18g1136 875 SMART helicmild6 523 608 IPR001650 -
Vvi18g1136 875 PANTHER BNAA01G17110D PROTEIN 37 256 - -
Vvi18g1136 875 PANTHER BNAA01G17110D PROTEIN 431 829 - -
Vvi18g1136 875 CDD SF2_C_DEAD 485 617 - -
Vvi18g1136 875 MobiDBLite consensus disorder prediction 804 875 - -
Vvi18g1136 875 CDD DEADc_DDX27 136 473 - -
Vvi18g1136 875 SMART ultradead3 144 488 IPR014001 -
Vvi18g1136 875 Pfam DEAD/DEAH box helicase 149 294 IPR011545 GO:0003676|GO:0005524
Vvi18g1136 875 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Vvi18g1136 875 MobiDBLite consensus disorder prediction 804 824 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1136 K13181 DDX27, DRS1; ATP-dependent RNA helicase DDX27 [EC:3.6.4.13] - vvi:100255871 739.954
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1136 Blo01g01604 . Bda01g00477 . Bpe02g00342 . . Bma01g02375 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010512 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 0 1 1 0 1 1 1 32