Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1137 ATGACGCTCGAGGACTTCTTTACCCTTACTGAAATGAAAGATGGGCTCACAGCCCCTGCTCGAGTTGAGGAGTTGGTTACTGTGATGCAGAAGGAGAAAGATTGTGTTGTAAAGAATGTTGGTGATGCTACCAGACAGTGGTCTACTGTTGCAAGCACCATAGCAGCCACAGAGAACCAAGATTGTCTTGATCTTTTTATTCAGTTAGATGGACTCTGGTTTATAAATAGGTGGCTCAAGGATGCTCAGAAGTTTGGTAATGACCCAAGTGACAGCTTTGTGGAAGAGTCAATCACTGCTCTATTAAGGGCACTTGAAAAGCTTCACATAGACAATGAGAAGTTAATTTCTTCTGGAATCTGGATTACTGTGAAGAATCTTCTCGGCCATGATAGCTCTAGGATTCAGGATAGGGCAAGAGCCTTGTTTGATAGCTGGAAACAGAGTAAGGACTGTGATGCAGTTCACCAGGATGTTGAGAAAGTTGGGGCATTTTGTGATGATGGGATCATAGTCAGTGCAAAGCCCACTGGGGAAAGTGGACTGCCAGAATGTTCTGCCATGGATATTTCTCTTTCCAAAGAAAGTGCTAATGTTGAATCTGCAGATCCTCCTCCCCACTCTGTCATGCTAAACCCTGTTCAAGAAAACAACCTCTCTATGAAGGAAGAATCCCCATCATGCCCTTCAGAAGGAACCACCACTATCAAGACTAGTTGTTCATCAATTCCAGCCGAAGGAAATTTTGAAGGGAACTCAGGTGTCCCCAAAGTGAATGAGTTCACTGATGATGAGAAGCAGATGCACGAAATGAATAGTTCCCCAGACCATTTGGGGAAGGAATTTTCTCCAACCTCTACTACACTGGAGCCCAGAGTAGTTTCTTCAACGGGTGACTTCTCTGAAAAATCTAAAACGCTTGGGTCTGAACCTGAGAGTGGGAAGGATGATATTGGTGTTCTAGGTCATTGCAAAAGTACACTTGTCTTCAAGACTACAGGTGAAGGTGGTGAAAATTGTTCTAATGTTTTGCAGGATGGCAATGACGGTACATTGGGGAAATCTGAGGATCCAGAGACTTCTTTTTCCAGGATGGAGGACATTGGAGGGATCAATGAAGATCAGGGGCATGCTAGTGATGGATGTGATGATTTGACAAATGCTTCTGATTTCTCAAGATTAGCAATGGAGGGTAAAGGGTCTGACTTGATTGACAAGAAGTCCGATATTGAACTTGAGTATGGCATGGTCGATCCTCTAGAACTTGCTCGAAGAGTTGCAAAGGAAGTGGAGAGACAAGTGGGGGATTTCAGAGAACCATTCTGCAGCTCATCTTCAGAGAAAATCTCAGAAGGTGGAATCAGGGTGCCAGATAGTCCAGATTCCATAAATGGAAAGCAACAACAACCCATGGATGGCCCACCAACTGAGGTGCCAGCTGGACAAATTACCCCTGTCGACGCATTGTTGAAGGAGGAGGAGCATTTAAACTCACAAAACCTAGATGTGGAACCAGAAAATTGCATACCTGATAAAGGTGCGTGTGATTTTGATTTGAATCATTTCGATCTGAATCAAGAAATCGTCCCTGAGGATATGGATCGCCCTGTGAATCCCATTTCTACCCCCGTTGCTGTTGTGTCCGCTTCAAGGGCAACGGCGGCTCCTGGTTTGCCTGTAGCCCCTCTGCAGTTTGAGGGGACTCGTGGATGGAAAGGATCTGCTGCAACAAGTGCTTTTCGGCCAGCATCCCCTCGCAGAATACCTGATGGTGGTAAAACACTCTTAACTGGGGAAACCTCCAACAGTTCAAAGCAGAAGCAGCAGTTTGATTTTGATCTGAATGTGGTTGAGGGTGGAGACGATGATCTGATGTTTCCAGCGTCATCTGGTTTCCCATCAGGAGAATCTTCAGTGGAAGTAAGTCCTAAGAGATCAGATAGGCTCAAGTTGGACTTAAACCGTGTCAGCAATGAGGGTGATGCTCCACTGTCAGACTGGAAGATAGAAGGACCGACTGACTCAAACAAGATGAACCTGTCATTTCTCTTTTGGGAACTAGAGTGGGGGTCAATAGAAAAACTGTTATGCCTCAAACACCATCCTACCAGCCCAACGGAAAGGCTCCAGAGACTGCAGTGGATGCTAACTTGGGAAGAACAGGTGGTATTTTGGGGATGGGACCGCCGGGGTCTTATCCACATTCTCATGTTCTAG 2217 45.6 MTLEDFFTLTEMKDGLTAPARVEELVTVMQKEKDCVVKNVGDATRQWSTVASTIAATENQDCLDLFIQLDGLWFINRWLKDAQKFGNDPSDSFVEESITALLRALEKLHIDNEKLISSGIWITVKNLLGHDSSRIQDRARALFDSWKQSKDCDAVHQDVEKVGAFCDDGIIVSAKPTGESGLPECSAMDISLSKESANVESADPPPHSVMLNPVQENNLSMKEESPSCPSEGTTTIKTSCSSIPAEGNFEGNSGVPKVNEFTDDEKQMHEMNSSPDHLGKEFSPTSTTLEPRVVSSTGDFSEKSKTLGSEPESGKDDIGVLGHCKSTLVFKTTGEGGENCSNVLQDGNDGTLGKSEDPETSFSRMEDIGGINEDQGHASDGCDDLTNASDFSRLAMEGKGSDLIDKKSDIELEYGMVDPLELARRVAKEVERQVGDFREPFCSSSSEKISEGGIRVPDSPDSINGKQQQPMDGPPTEVPAGQITPVDALLKEEEHLNSQNLDVEPENCIPDKGACDFDLNHFDLNQEIVPEDMDRPVNPISTPVAVVSASRATAAPGLPVAPLQFEGTRGWKGSAATSAFRPASPRRIPDGGKTLLTGETSNSSKQKQQFDFDLNVVEGGDDDLMFPASSGFPSGESSVEVSPKRSDRLKLDLNRVSNEGDAPLSDWKIEGPTDSNKMNLSFLFWELEWGSIEKLLCLKHHPTSPTERLQRLQWMLTWEEQVVFWGWDRRGLIHILMF* 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12579079 12591899 - Vvi18g1137 Vvi18g1137 780840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1137 738 MobiDBLite consensus disorder prediction 441 481 - -
Vvi18g1137 738 MobiDBLite consensus disorder prediction 336 361 - -
Vvi18g1137 738 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 202 - -
Vvi18g1137 738 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 207 673 - -
Vvi18g1137 738 Pfam TFIIS helical bundle-like domain 101 148 IPR017923 -
Vvi18g1137 738 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 18 150 IPR035441 -
Vvi18g1137 738 MobiDBLite consensus disorder prediction 336 358 - -
Vvi18g1137 738 MobiDBLite consensus disorder prediction 278 304 - -
Vvi18g1137 738 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 207 673 - -
Vvi18g1137 738 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 202 - -
Vvi18g1137 738 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 149 IPR035441 -
Vvi18g1137 738 ProSiteProfiles TFIIS N-terminal domain profile. 73 153 IPR017923 -
Vvi18g1137 738 MobiDBLite consensus disorder prediction 269 318 - -
Vvi18g1137 738 MobiDBLite consensus disorder prediction 575 609 - -
Vvi18g1137 738 MobiDBLite consensus disorder prediction 595 609 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1137 - - - vvi:100247144 1283.09
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g146 Vvi18g1137 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1137 . Blo12g00881 . . . . Bma04g00250 Bma01g02376 . . Cma01g01979 Cma09g00097 Car01g01551 . . Cpe06g00060 . . . . . . . . . . . . . . . . . Cone17ag1414 Cone20ag0069 Lsi04g01755 Csa03g04289 Chy04g00407 . . . . . . . . . Sed01g2483 Cmo01g02038 Cmo09g00094 . . . Car09g00085 . Cpe02g00065 Bhi09g02076 Tan01g5035 Cmetu04g3193 . Hepe01g1606 Mch11g0106 . Cla05g01862 Cam05g1991 Cec05g2003 Cco05g2061 Clacu05g1983 Cmu05g1864 Cre05g1988 . . . Cme04g00459
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008019 0 1 1 2 0 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14270 PF08711 Med26 8.00E-10 No_clan Vvi TR