Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1139 ATGGAGACTCAGAGCTCTCCTCCATGTCCCTACACGGTAACGGTTCGAAGAAACCCTCATCGCAAAGCCAGGGCAACGCCTTCAACAAGCGTTCCTCCTCGTCCTCTTCTTTCAAACCCCATTACTTCAGAAATTCCAGCATTTCCGATCCAAGAAATTTTGGCCATGCAAGTCCCTCAAACCCTCCCAACTCCCTCCCCCGAAAATCTCAGAGTTTTTCTCAGAATTCGACCCCTCATCACTCTTCAAGGCACGAAGATTAAGAGAAAGAAGAACAAGAACTCTGAAATTTGTATCGCGGTTAATAACACGCAGTCGGTGACACTCTCGCCGCCTTCCCACTTGAAGGATCTGAAGCGGATCAAGTCTGAGGTCTATGAAGGCTTTTCTCATGTGTTCTCTGCCGATTCTTCTCAGGAAGAAGTCTATGAAAGGATGGTGAAGCCTTTGGTGGAGGATTTCATCAATGGCAAAAGCGGGATGCTGGCTGCATTGGGCCCTAGTGGATCTGGCAAGACCCATACTGTTTTTGGGTGTCCAAGGGAGCCTGGAATGGTACCTCTTGCACTTCAACAAATTTTCAAGCGGACTGAGGGGAGTGGTTCTGAGGCAACAAGGTCATTTTACATATCAATATTTGAAATATATTCTGAAAGAGGAAAAGGAGAAAGGATGTTAGATTTGTCCCCAGGTGGAGCAGATTTATTCATGCAACAGTCATCTATAAAAGGTCTTCAAGAGGTAGTCATTTCTGATGTTGCACAGGCAGAATCCTTAATAGCACAAGGCATGTTAAAACGCTGTACTGCAATGACAAATTCAAACAGCCAGTCAAGCCGGTCACAGTGCATTATAAACATCCGCAGTGCTCCTAACAACTTAGAGAGTGACGTTGGTGTTCAACTGAACAGTGCAGTATTAACTATTGTTGACCTTGCTGGTGCTGAAAGAGAAAAGAGAACTGGGAATCAGGGGGCCAGATTACTTGAGAGCAATTTCATCAACAACACATCAATGGTTTTTGGATTGTGTCTGAGGTCATTGTTGGAGCATCAAAGGAACCCCAAGAAGCCACTACAGAAACATTTTCAGAACTCTTTGTTAACTAGGTACTTACGAGATTATTTGGAAGGCAAGAAGCGGATGGCATTGATTTTGACGATAAAGCCAGGAGAAGAAGACTATCTTGATACATCCTTTCTACTAAAACAAGCTTCCCCTTATATGAAAATCAAGTTCAATAATGTTGAAGAATTGTCCGATTTGGTTGCTAATAAGAGGCATGTTCGAACATTACCTAGATTTGAACAGCGCAAAAGAATGAAGTTCAGTAACCCTGATGCTTGTGTGGTCAATCCAGAGGAGCTCAAGGAGACTGGAACCGTAAAAGCTCTGGTTCAGTCCCCAAGAAATTCTAAATTGGATGTTTATGATAGCACATTTCTCAAGTTGAATGGTGTTGAATTGGCAAAGAGAGAGAGAAACAATCAGATTATGCAAGGTTTTGCAAAAGCTTTATGGGATGTTTTGAAGCAATATAAGGAAAAACTTGAGGCAATTTTAGCAGTAAATATACCAATCCATTTGACAACTCTGCTTTAA 1602 42.57 METQSSPPCPYTVTVRRNPHRKARATPSTSVPPRPLLSNPITSEIPAFPIQEILAMQVPQTLPTPSPENLRVFLRIRPLITLQGTKIKRKKNKNSEICIAVNNTQSVTLSPPSHLKDLKRIKSEVYEGFSHVFSADSSQEEVYERMVKPLVEDFINGKSGMLAALGPSGSGKTHTVFGCPREPGMVPLALQQIFKRTEGSGSEATRSFYISIFEIYSERGKGERMLDLSPGGADLFMQQSSIKGLQEVVISDVAQAESLIAQGMLKRCTAMTNSNSQSSRSQCIINIRSAPNNLESDVGVQLNSAVLTIVDLAGAEREKRTGNQGARLLESNFINNTSMVFGLCLRSLLEHQRNPKKPLQKHFQNSLLTRYLRDYLEGKKRMALILTIKPGEEDYLDTSFLLKQASPYMKIKFNNVEELSDLVANKRHVRTLPRFEQRKRMKFSNPDACVVNPEELKETGTVKALVQSPRNSKLDVYDSTFLKLNGVELAKRERNNQIMQGFAKALWDVLKQYKEKLEAILAVNIPIHLTTLL* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12620618 12628019 - Vvi18g1139 Vvi18g1139 780842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1139 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 412 IPR027417 -
Vvi18g1139 533 MobiDBLite consensus disorder prediction 19 38 - -
Vvi18g1139 533 SMART kinesin_4 67 419 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1139 533 ProSiteProfiles Kinesin motor domain profile. 69 411 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1139 533 PANTHER KINESIN-LIKE PROTEIN KIF23 67 518 - -
Vvi18g1139 533 Gene3D Kinesin motor domain 66 445 IPR036961 -
Vvi18g1139 533 PANTHER KINESIN-RELATED 67 518 IPR027640 GO:0003777|GO:0007018
Vvi18g1139 533 Pfam Kinesin motor domain 76 406 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1139 533 PRINTS Kinesin heavy chain signature 157 178 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1139 533 PRINTS Kinesin heavy chain signature 272 289 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1139 533 PRINTS Kinesin heavy chain signature 306 324 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi18g1139 533 PRINTS Kinesin heavy chain signature 361 382 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1139 K10401 KIF18_19; kinesin family member 18/19 - vvi:100252261 994.186
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1139 . . . . . . . . . . . . . . . . . Bhi04g00138 . . . Hepe10g0163 . . Cla08g01415 Cam08g1894 Cec08g1471 Cco08g1604 Clacu08g1586 . Cre08g1369 . . . Cone20ag0437 . . . Cme03g01871 Blo17g00740 . Bda08g01213 . . Bpe05g00146 . . . . . Cma12g00402 . . Car15g00615 . . . . . . . . . . . . . . . . Lsi08g01310 Csa02g02143 Chy03g00784 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005587 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 37