Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g114 ATGCATAGATATGTGTCTAGGGTTCCTTTGCGATCGATTTCTGACTCACTTTACTTATCAAAGTCATCTGTATACGATCAGAAGAATCTCGTGAGAAAATTGGAATCATTGAGGACTTTTACAACCTCAAGAGATCACGATTGCTTCGGGTATGGAAGAAAATCAATTACCAGGCTCTTGCAGGTGCAAATTGTTGATGCACTTCGCTCAAACGAGAGAAGCAGGGCTTCGAGTTTGCTTTCAGAACTTGGCCGTGGAAACTACTCCTTAAGAGCTGATGATTTTATTTATATTCTTGAACACTGCTCAAAATCACCTGATCCCTTATTTGTCATGGAGATTTGGAGAATTATGGATGAAAAAGAGGTTCACGTGAACAATAGATGCTACATGCTTAGCATTCAAGCTCTCTGTAAAGGGGGTTACCTGGAGGAGGCGTTTAATTTATTGAATTTTGTTGGAGAAAATCATGATATCCATCCTATTCTGCCTATGTACAATAATTTCTTGAGAGGATGTGTTCAAACAAGGAGTCTACTTCACGCCAACCAATGCTTGGATCTGATGGAGCACCAAGTACTGGGGAAGAATGAAGTAACGTATTCACAGTTTCTCAAGCTTGCAGTTTTGCAGCAAAACCTGTCTGCTGCCCATAAAATTTGGAAGGAATATATGACATACTATAGTATGAGCATCATTTCTCTGCGGAAGTTTATTTGGTCCTTTACAAGGTTGAGAGATTTGGAATCGGCTTATGCAGCCTTGCAACATATGGTGGATTTGGTTTTCAAGGGAAGCATCTTTATCAATAAAAGTGCTGAAGGAAGGTTATGTTCTTCAAGATTGGACATTCCTATACCTAAGAATGGTGATATGGGTCTGAAGAGATGTATGGAGGAGAACGAACATTCTTTACCTTCTGTCTCTGATAATAGTAAGAAAATAGACTCTCATGCAAGCATGCCTGTAATGAAGGTTTTGAGGTGGTCTTTCAGTGATGTGATATATGCATGTGCACAAACTCAGAACTGTGGACTGGCAGAACAGTTAATCCTCCAGATGCAAAACCTTGGGTTGGAACCATCATGCCATACATACGATGGCTTAATCAAAGCAATTGTCAGTGACAGAGGTTTCAGTGATGGCATGGAAGTGTTAAAAACAATGCAACTGAGGAATTTGAAGCCATATGATTCAACTCTTGCTGCTCTTTCAATAGGTTCCAGCAAAGCTTTACAGCTGGATTTAGCAGAGTCTTTGCTGGATCAAATTTCCAGAATTTCATATGTTCATCCCTTTAATGCTTTTCTTGCAGCATGTGACACACTGGATCAACCTGAACGTGCTGTTCCAATACTGTCTAAGATGAAACAACTGAAGCTTCAGCCAAATGTTGGAACATATGAGCTGCTATTCTCCCTATTTGGTAATGTGAATGCGCCATATGAGGAGGGGAATATGTTGTCACAGGTTGATGTCGCTAGAAGGATAAAGGCTATAGAAATGGACATGATGAATAATGGCATTCAACACAGTCATTTATCAATGAAGAACTTGCTGAAAGCCCTTGGAGCAGAGGGGATGATAAGAGAATTGATGCAATACTTACATGTGGCAGAAAACCAATTCTTCCGTACTAACACTTATCTTGGAACTCCTATTTATAATACGGTGTTACATTCACTTGTTGAAGCCAAGGAAAGTCACATAGCAATAGAAATATTCAAAAATATGATTTCACGCAGTCTTCCGCGAGATGCTGCAACTTATAATATAATGATAGATTGTTGCAGTACTATAAAATGTTACAAATCAGCTTGTGCTCTGGTTTCTATGATGATGCGTGATGGTTTTCTTCCATGGACATTAACCTACACTGCTCTCATAAAGATTCTTTTAGAGCGTGAAGATTTTGATGAAGCATTGAATCTTCTAGATCAAGCAAGATTAGAAGAAATACCATCTGATGTCCTGTTATATAACACTATTCTTCAGAAAGCATGTCTAAAGGGAAGAATCGATTTGATTGAGCTTGTTGCTGAGCAGATGCACCAAGAGAAAATCCAGCCCGATCCATCAACCTGCTACTATGTGTTCTCTTCCTATGTGGACGGTGGTTTCTTCAGCACGGCCCTGGAATCATTGCAGGTTCTCAGTATGCGTATGATTTCTGAAGACAATAGCACTCTTGAGGAAAAGAGAACAGAATTGGAGGATTTCATCCATTCTGAAGACAAGGATGCAGAATCTCAGATCCTCCAGTTTTTTAAAGGTTCTGACGAGAATCTTGCTATTGCACTTTTAAATTTAAGATGGTGTGCCATATCTGGGTCCCCAATTTCATGGACACCGAATGAAAGTTTATGGGCCAGGAGACTTTTCAATAGTCATGGTTCCAGAAAAAGAGCATCCTGA 2415 39.67 MHRYVSRVPLRSISDSLYLSKSSVYDQKNLVRKLESLRTFTTSRDHDCFGYGRKSITRLLQVQIVDALRSNERSRASSLLSELGRGNYSLRADDFIYILEHCSKSPDPLFVMEIWRIMDEKEVHVNNRCYMLSIQALCKGGYLEEAFNLLNFVGENHDIHPILPMYNNFLRGCVQTRSLLHANQCLDLMEHQVLGKNEVTYSQFLKLAVLQQNLSAAHKIWKEYMTYYSMSIISLRKFIWSFTRLRDLESAYAALQHMVDLVFKGSIFINKSAEGRLCSSRLDIPIPKNGDMGLKRCMEENEHSLPSVSDNSKKIDSHASMPVMKVLRWSFSDVIYACAQTQNCGLAEQLILQMQNLGLEPSCHTYDGLIKAIVSDRGFSDGMEVLKTMQLRNLKPYDSTLAALSIGSSKALQLDLAESLLDQISRISYVHPFNAFLAACDTLDQPERAVPILSKMKQLKLQPNVGTYELLFSLFGNVNAPYEEGNMLSQVDVARRIKAIEMDMMNNGIQHSHLSMKNLLKALGAEGMIRELMQYLHVAENQFFRTNTYLGTPIYNTVLHSLVEAKESHIAIEIFKNMISRSLPRDAATYNIMIDCCSTIKCYKSACALVSMMMRDGFLPWTLTYTALIKILLEREDFDEALNLLDQARLEEIPSDVLLYNTILQKACLKGRIDLIELVAEQMHQEKIQPDPSTCYYVFSSYVDGGFFSTALESLQVLSMRMISEDNSTLEEKRTELEDFIHSEDKDAESQILQFFKGSDENLAIALLNLRWCAISGSPISWTPNESLWARRLFNSHGSRKRAS* 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1111707 1129725 + Vvi18g114 Vvi18g114 779817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g114 804 Pfam Pentatricopeptide repeat domain 644 697 IPR002885 -
Vvi18g114 804 Pfam Pentatricopeptide repeat domain 432 477 IPR002885 -
Vvi18g114 804 Pfam Pentatricopeptide repeat domain 333 374 IPR002885 -
Vvi18g114 804 Gene3D Tetratricopeptide repeat domain 553 758 IPR011990 GO:0005515
Vvi18g114 804 Gene3D Tetratricopeptide repeat domain 431 552 IPR011990 GO:0005515
Vvi18g114 804 Pfam PPR repeat 134 151 IPR002885 -
Vvi18g114 804 TIGRFAM PPR: pentatricopeptide repeat domain 554 586 IPR002885 -
Vvi18g114 804 TIGRFAM PPR: pentatricopeptide repeat domain 589 621 IPR002885 -
Vvi18g114 804 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 656 690 IPR002885 -
Vvi18g114 804 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 586 620 IPR002885 -
Vvi18g114 804 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 802 - -
Vvi18g114 804 Pfam PPR repeat family 554 597 IPR002885 -
Vvi18g114 804 Gene3D Tetratricopeptide repeat domain 57 234 IPR011990 GO:0005515
Vvi18g114 804 Gene3D Tetratricopeptide repeat domain 324 430 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g114 - - - vvi:100262486 1556.19
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g114 Blo01g01626 . . . Bpe02g00316 . . Bma01g02401 . . . . . . . Cpe06g00028 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00963 . . . . . . . Cmo09g00062 . . . Car09g00053 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005329 1 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 3 2 1 40