Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1140 ATGTGTTTGTTTACCTTCTTTGTCTGTCAGCAGAAAACTAAAAGAAGACAAGTGGCTAGCCTCTACCTCTGCCCCCAAACTCTTGAAATGCCTATTCTTGATGCTCTGGTAGCACCTATCAAGAAGCTTGTGGGGTTATTACATGTAAAGGTTGTACGGGCACGCAAACTCTTGAAGATGGACATCCTTGGAGCATCCGATCCTTATGTTAAACTCAGTCTAAGTGGGGAGAGGCTTCCAGCAAAGAAAACCTCTATTAAGATGAAGACACTGGACCCTGAGTGGAATGAAGATTTCAAATTGATTGTAAAGGACCCAAAATCTCAAGTCCTACAGTTACATGTCTATGATTGGGAAAAGGTTTAA 366 41.8 MCLFTFFVCQQKTKRRQVASLYLCPQTLEMPILDALVAPIKKLVGLLHVKVVRARKLLKMDILGASDPYVKLSLSGERLPAKKTSIKMKTLDPEWNEDFKLIVKDPKSQVLQLHVYDWEKV* 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12634520 12635198 - Vvi18g1140 Vvi18g1140 780843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1140 121 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 42 120 IPR035892 -
Vvi18g1140 121 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 5 121 IPR045050 GO:0008289
Vvi18g1140 121 SMART C2_3c 46 119 IPR000008 -
Vvi18g1140 121 Pfam C2 domain 45 120 IPR000008 -
Vvi18g1140 121 Gene3D C2 domain 41 121 IPR035892 -
Vvi18g1140 121 PANTHER SYNAPTOTAGMIN-3-LIKE ISOFORM X1 5 121 - -
Vvi18g1140 121 CDD C2 47 121 - -
Vvi18g1140 121 PRINTS C2 domain signature 62 74 IPR000008 -
Vvi18g1140 121 PRINTS C2 domain signature 89 102 IPR000008 -
Vvi18g1140 121 PRINTS C2 domain signature 111 119 IPR000008 -
Vvi18g1140 121 ProSiteProfiles C2 domain profile. 27 121 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1140 - - - vvi:100261834 206.838
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g153 Vvi18g1140 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1140 . . . . . . . . Cmo05g00317 . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0067 . . . . . . . . . Bpe05g00147 . Bma05g00171 . . . . Cma05g00316 Car05g00262 . Cpe11g00263 . . . . . . . . . . . . . . . . Csa02g02145 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019244 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 5