Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1142 ATGAGAGCCTCCTTGAAATATGCTCTTCCTTTTTTCATATGCCTGATGATGTTTTCACGGGGCTTTGCGTACGGTGATCTTCAAGTGCTGTTGAAGCTCAGGTCTTTCATGATAGGGCCGAAGGGTTCTGGTCTGGAGGACTGGGTGGATGACTCGTCGTCTCTCTTTCCGCATTGCTCCTTCTCCGGTGTTTCATGTGATGAGGATTCTCGAGTGGTGTCTCTCAACCTCTCGTTTGTTACTCTATTTGGTTCGATACCGCCGGAGATCGGGATGTTGAACAAGTTAGTTAATCTCACGCTGGCATGCGACAATCTCACCGGGAAGCTTCCGATGGAGATGGCGAAGCTCACGTCTCTGAAGCTCGTCAACCTTTCGAATAACAATTTTAATGGTCAGTTTCCGGGGCGTATTCTTGTGGGAATGAAGGAGCTCGAGGTTCTGGACATGTATAACAACAATTTCACGGGTCCGCTTCCGACGGAGGTTGGGAAGCTGAAGAAGCTCAAGCACATGCATCTCGGTGGCAACTACTTCTCCGGTGATATTCCGGACGTATTCTCAGATATTCACAGCTTGGAGTTGCTGGGTTTGAATGGAAACAATCTTTCCGGCAGGATCCCGACTAGTTTGGTTCGGTTGTCGAACCTCCAAGGATTGTTCCTTGGTTACTTTAATATTTACGAAGGAGGTATTCCACCTGAGCTAGGGTTGCTGAGTTCGCTCCGAGTTCTTGACTTGGGGAGCTGCAACCTCACCGGAGAGATTCCACCGAGCCTAGGCCGTTTGAAGATGTTACACTCGTTGTTTCTACAACTTAATCAGCTCTCAGGGCACCTACCTCAAGAACTGTCAGGTTTGGTGAATCTAAAATCACTTGATCTCTCTAACAATGTGCTCACTGGAGAGATACCAGAAAGCTTTTCACAGCTTAGGGAATTGACGTTGATCAATCTGTTTGGGAACCAACTGCGCGAACTACCTGCGCATATTTCGGGCGACGTGCTTGGAATTTTCACGGTCTCTAACAACCTGATCACTGGAAAAATCCCTCCGGCAATTGGCAATCTGTCTAGTTTGCAGACTTTGGCGCTTCAAATTAACAGATTCTCCGGTGAAATTCCTGGGGAAATCTTCAATCTAAAGATGCTTTCAAAGGTCAATATCAGCGCCAACAACCTAAGCGGTGAAATTCCAGCATGCATCGTTTCTTGTACTTCACTAACATCAATTGATTTCAGTCAGAACAGCCTGAACGGAGAAATTCCAAAGGGGATTGCTAAGCTTGGGATCTTGGGCATACTGAATTTGTCAACCAACCACTTGAACGGCCAAATTCCGAGTGAAATCAAATCTATGGCTAGTCTAACAACACTGGACCTCTCCTATAATGATTTTTCTGGTGTCATTCCGACCGGCGGTCAGTTTCCGGTCTTCAACTCTAGCTCCTTCGCTGGAAACCCGAACCTTTGCCTACCGCGTGTCCCTTGTTCATCACTTCAAAATATAACCCAAATTCACGGTAGAAGGCAGACGTCATCGTTTACTTCTTCAAAACTCGTCATCACGATCATTGCCCTTGTCGCCTTCGCGTTGGTATTAACCCTCGCAGTTCTCAGAATCCGAAGAAAGAAGCATCAGAAATCAAAGGCCTGGAAGCTCACAGCCGGAAGAAGCGACCACGGCTTTTCCGCCGAAATCCAAACGCTAGGACGAATTCGACACCGAAACATCGTGAGACTGTTGGGTTACGTGTCGAACAAAGACACCAACTTGTTGCTGTACGAGTACATGCCGAACGGAAGCTTGGGAGAGATACTGCATGGGTCAAAGGGAGCCCACTTGCAGTGGGAAACCAGGTATAGAATTGCAGTGGAGGCCGCGAAGGGGTTGTGCTATCTCCACCACGATTGTTCCCCACTCATCATTCACAGGGATGTGAAGTCCAACAACATCTTGCTGGACTCGGATTTTGAGGCTCATGTGGCTGATTTTGGGCTTGCCAAGTTCTTACAGGACGCTGGAGCCTCGGAGTGCATGTCTTCCATCGCTGGCTCCTACGGCTACATCGCCCCAGAGTACGCCTATACGTTGAAAGTAGATGAGAAGAGCGACGTGTACAGCTTCGGTGTGGTGCTGCTGGAGTTGATCGCAGGGCGGAAGCCAGTGGGCGAGTTCGGCGACGGGGTGGACATCGTGAGGTGGGTCCGGAAAACAACATCGGAGATATCTCAGCCGTCGGATAGAGCTTCGGTTCTGGCAGTAGTGGACCCCAGGCTTAGTGGGTACCCACTGACAGGTGTCATAAATCTGTTCAAGATTGCAATGATGTGCGTTGAGGATGAGAGCTCTGCAAGGCCCACCATGAGAGAGGTGGTTCACATGCTCACCAATCCTCCCCAGAATGCTCCAAGCCTCATCACTCTTTAA 2430 48.97 MRASLKYALPFFICLMMFSRGFAYGDLQVLLKLRSFMIGPKGSGLEDWVDDSSSLFPHCSFSGVSCDEDSRVVSLNLSFVTLFGSIPPEIGMLNKLVNLTLACDNLTGKLPMEMAKLTSLKLVNLSNNNFNGQFPGRILVGMKELEVLDMYNNNFTGPLPTEVGKLKKLKHMHLGGNYFSGDIPDVFSDIHSLELLGLNGNNLSGRIPTSLVRLSNLQGLFLGYFNIYEGGIPPELGLLSSLRVLDLGSCNLTGEIPPSLGRLKMLHSLFLQLNQLSGHLPQELSGLVNLKSLDLSNNVLTGEIPESFSQLRELTLINLFGNQLRELPAHISGDVLGIFTVSNNLITGKIPPAIGNLSSLQTLALQINRFSGEIPGEIFNLKMLSKVNISANNLSGEIPACIVSCTSLTSIDFSQNSLNGEIPKGIAKLGILGILNLSTNHLNGQIPSEIKSMASLTTLDLSYNDFSGVIPTGGQFPVFNSSSFAGNPNLCLPRVPCSSLQNITQIHGRRQTSSFTSSKLVITIIALVAFALVLTLAVLRIRRKKHQKSKAWKLTAGRSDHGFSAEIQTLGRIRHRNIVRLLGYVSNKDTNLLLYEYMPNGSLGEILHGSKGAHLQWETRYRIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLDSDFEAHVADFGLAKFLQDAGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGEFGDGVDIVRWVRKTTSEISQPSDRASVLAVVDPRLSGYPLTGVINLFKIAMMCVEDESSARPTMREVVHMLTNPPQNAPSLITL* 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12668322 12671744 - Vvi18g1142 Vvi18g1142 780845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1142 809 SMART LRR_typ_2 287 310 IPR003591 -
Vvi18g1142 809 SMART LRR_typ_2 311 334 IPR003591 -
Vvi18g1142 809 SMART LRR_typ_2 453 476 IPR003591 -
Vvi18g1142 809 SMART LRR_typ_2 357 381 IPR003591 -
Vvi18g1142 809 SMART LRR_typ_2 117 141 IPR003591 -
Vvi18g1142 809 SMART LRR_typ_2 239 263 IPR003591 -
Vvi18g1142 809 SMART LRR_typ_2 142 166 IPR003591 -
Vvi18g1142 809 SUPERFAMILY Protein kinase-like (PK-like) 546 796 IPR011009 -
Vvi18g1142 809 Pfam Leucine rich repeat N-terminal domain 25 67 IPR013210 -
Vvi18g1142 809 SMART serkin_6 530 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1142 809 Pfam Protein tyrosine and serine/threonine kinase 558 796 IPR001245 GO:0004672|GO:0006468
Vvi18g1142 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Vvi18g1142 809 ProSiteProfiles Leucine-rich repeat profile. 289 311 IPR001611 GO:0005515
Vvi18g1142 809 Gene3D Ribonuclease Inhibitor 25 138 IPR032675 -
Vvi18g1142 809 ProSiteProfiles Protein kinase domain profile. 501 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1142 809 Gene3D Ribonuclease Inhibitor 228 504 IPR032675 -
Vvi18g1142 809 Pfam Leucine Rich Repeat 241 262 IPR001611 GO:0005515
Vvi18g1142 809 PANTHER UNNAMED PRODUCT 5 325 - -
Vvi18g1142 809 PANTHER UNNAMED PRODUCT 558 803 - -
Vvi18g1142 809 PANTHER UNNAMED PRODUCT 326 556 - -
Vvi18g1142 809 SUPERFAMILY L domain-like 201 493 - -
Vvi18g1142 809 Gene3D Transferase(Phosphotransferase) domain 1 599 804 - -
Vvi18g1142 809 SUPERFAMILY L domain-like 28 271 - -
Vvi18g1142 809 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 558 803 - -
Vvi18g1142 809 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 326 556 - -
Vvi18g1142 809 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 5 325 - -
Vvi18g1142 809 Gene3D Phosphorylase Kinase; domain 1 534 598 - -
Vvi18g1142 809 Pfam Leucine rich repeat 266 324 IPR001611 GO:0005515
Vvi18g1142 809 Pfam Leucine rich repeat 144 203 IPR001611 GO:0005515
Vvi18g1142 809 Gene3D Ribonuclease Inhibitor 139 227 IPR032675 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76337 PF07714 PK_Tyr_Ser-Thr 2.30E-38 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1142 K00924 - zju:107420421 830.476