Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1145 ATGGCGTATAGCCGGCAACGTGATTTCATGTTCTGTAATTTGTGCGGAACAATGCTATGTATGAGTTCAACTAAGTACGCTGAATGCCCTTTGTGCAAGTCCAGGCGAAAAGTGAAAGATATTTCTGGAAGAGAAATACGTTACACTGTTTCTGCAGAGGATATTAGAAGAGAGCTGAATATTGAGCCATTTGTAAAACTAGATGGAATTATTACTGAAGAGTCAGAAGCCCAAAATGCAAAAACGAAGGGAAGATGTGATCGATGTGAAGAAGACACTTGGCTCTATTATTACACCAGACAATTGAGATCTGCGGATGAAGGACAGACCATTTTTTATGAGTGCACTAAATGTGGACACAAGTGGTCACAGAATACATGA 381 39.9 MAYSRQRDFMFCNLCGTMLCMSSTKYAECPLCKSRRKVKDISGREIRYTVSAEDIRRELNIEPFVKLDGIITEESEAQNAKTKGRCDRCEEDTWLYYYTRQLRSADEGQTIFYECTKCGHKWSQNT* 127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12699749 12707465 - Vvi18g1145 Vvi18g1145 780848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1145 126 SUPERFAMILY Zinc beta-ribbon 77 125 - -
Vvi18g1145 126 Gene3D - 52 124 - -
Vvi18g1145 126 PIRSF RNApol_RpoM 9 126 IPR012164 GO:0006351
Vvi18g1145 126 PANTHER DNA-DIRECTED RNA POLYMERASE 5 126 IPR012164 GO:0006351
Vvi18g1145 126 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12 5 126 - -
Vvi18g1145 126 SMART Cys4_2 84 124 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vvi18g1145 126 CDD Zn-ribbon_RPA12 78 125 IPR034004 GO:0006379
Vvi18g1145 126 ProSiteProfiles Zinc finger TFIIS-type profile. 82 123 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vvi18g1145 126 Pfam Transcription factor S-II (TFIIS) 85 122 IPR001222 GO:0003676|GO:0006351|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1145 K03000 RPA12, POLR1H, ZNRD1; DNA-directed RNA polymerase I subunit RPA12 - vvi:100853901 269.626
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1145 . . . . . . . . Cmo05g00320 . . . . . . . . Bhi04g00126 . . . . . . Cla08g01411 Cam08g1890 Cec08g1467 Cco08g1600 Clacu08g1582 . Cre08g1365 . . . Cone20ag0066 . . . . . . . Bda01g01539 Bpe02g01736 . . . . . . . Cma05g00317 Car05g00264 . Cpe11g00265 . . . . . . . . . . . . . . . Lsi08g01306 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009165 1 5 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 34