Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1146 ATGGAAGGACTAGAACTTCGCTCCATTCAGATTTCCGATCAGAGCCCACTTCCAGAGAAGGATCAGCAATCCAACTCAAGTCCAAAAGACACTGTTTCCTTCTTCGGCCTATTTGCAGCTGCTGATACATTGGACTGTTTTTTTATGTTCTTTGGTAGCATTGGGGCTTGCATCCATGGTGCTGCACTTCCTGTGTTCTTTGTTTTGTTTGGCCGAATGATTGATTCTTTGGGACGCCTATCTTCAGATCCAGATAAACTTTCCTCTCAAGTTTCCAGGGTACCATTGATCTTAAAACACAGAAATGGTAATGGCTTCTTGAGTTCACATGCTCTATACTTGGTCTATCTTGGACTTGGGGTTTTAGCATCAGCATGGATCGGTGTTGCATTTTGGATGCAAACAGGGGAAAGGCAGACGGCCCGTTTGCGACTCAAGTATCTTCAGTCAGTCTTAAGACAGGATATTAATTTCTTTGACACTGAGGCCAGGGATAAAAATATCACTTTCCACATTTCAAATGATGCAATTCTGTTGCAGGATGCAATTGGTGACAAGATAGGCCATGGTTTACGTTACCTTTCTCAATTCTTTGTTGGATTTGCAATAGGATTCACATCAGTATGGCAGCTTACACTTCTCACCGTGGCTGTTGTTCCATTGATGGCTATTGCTGGAGGAGCCTATACAGTAATCATGACCACCTTGTCAGAAAAAGGTGAGGCTGCCTATGCTGAAGCTGGGAAGGTTGCAGAAGAGGCTATTTCACAGGTTCGTACTGTATACTCATTTGTGGGAGAGGATAGAGCAGTTGAAACATATTCAAGGTCACTTCAAAAGGCCCTTAAACTGGGGAAAAAGAGTGGGTTTGCAAAGGGAATTGGTATTGGCTTTACATATGGGCTTTTGTTTTGTGCTTGGGCATTACTTCTCTGGTATGCCAGCAAACTAGTCAGGCATGGGGACACAAATGGGGGGAAAGCATTCACTACAATTCTCAACGTCATATTCAGTGGATTTGCTCTTGGTCAAGCTGCCCCTAATCTTGCTGCCATTGCCAAAGGCCGGGCTGCTGCAGCCAATATAGTAAACATGATTGAAACAGATTCTACTGCTTCTAAAAGGTTAGATAATGGAATAATGTTGCCAAAAGTAGCTGGACAGCTTGAATTTTGTGAGGTCTGTTTTGCTTATCCCTCACGACCTAGTATGGTCTTCGAAAATTTGAGCTTTTCTATTTATGCTGGGAAGACCTTTGCTGTTGTTGGGCCAAGTGGTTCAGGAAAGAGCACCATTATTTCCATGGTTCAACGTTTCTATGAGCCCACTTCAGGTAAAATACTGTTGGATGGACATGATATTAAGAATCTCCGATTAAAATGGCTGAGAGCACAGATGGGGTTGGTTAGTCAAGAACCTGCATTGTTTGCCACGACTATAGCTGGGAACATTCTGTATGGAAAAGAAGATGCTGATATGGATCAGGTCATAGAAGCTGCCAAAGCTGCAAATGCACATTCTTTTGTTCAAGGCTTACCTGATGGTTATCAAACTCAGGTAGGAGAGGGAGGAACTCAGCTTTCTGGAGGGCAGAAACAGAGAATTGCAATTGCAAGAGCAGTGCTGAGGAACCCAAAGATACTGCTGTTAGATGAGGCCACTAGTGCTCTTGATGCAGAATCGGAACTCATTGTTCAGAAGGCACTAGATAAAATCATGTTGAATCGAACAACAATCGTTGTTGCACACAGATTATCCACAATTCGAGACGTTAATAAAATCATTGTTTTGAAGAATGGTCAGGTTGTTGAAAGTGGGACTCATTTGGAATTGATTTCCCAGGGAGGGGAGTATGCAACTTTAGTGAGCTTACAAGTATCAGAACATGGTAAAAGTCCAAAGCTACAGCCATATGATCAGAACATGGCCTCATCCAGCTCTCCTCCAATTCCATCACTTTGGCAACTAATTAAGCGAGAGGTTGACCACATTTCTCTCATATTTGTTGGAGCGGCCATTCTTACTATTTTCATATATCTATTGCAACACTATTTCTATACATTGATGGGCGAGCGTCTCACCACTCGCATTCGGTTATTAATGTTCTCAGCAATCCTTTCCAATGAGATAGGCTGGTTTGATTTGGATGAGAACAGTACTGGCTCTTTGACATCAAAATTAGCAGCAGATGCGACATTAGTAAGAAGCGCACTTGCCGACCGCCTCTCAACCATTGTGCAGAATGTTGCACTCACTGTGACAGCATTTGTTATTGCCTTCACATTAAGTTGGCGTATAGCATCTGTTATCATTGCCTCCTTCCCTCTTCTAATTGGAGCTTCCATAACTGAGCAACTATTTCTGAAGGGTTTTGGAGGAGACTACACACGGGCCTACGCTCAAGCAACTGCTGTGGCACGAGAAGCAATTGCCAATATTCGTACCGTTGCTGCATTTGGTGCTGAAGACCGAATCTCACTCCAGTTTGCTTCTGAACTGAACCAACCAAACAAACAAGCACTTTTACGTGGCCATATATCAGGTTTTGGATATGGTTTCAGGAATGTGAGTTTCAGATACCCCGCAAGGCCTGATCTCATCATCTTCAAGGACTTAAATTTGAAAATCTCAGCAGGAAAGAGTCTTGCAATAGTGGGCCAAAGTGGGTCAGGGAAGAGTACTGTGATCTCACTGTTATCAGGGGGACAGAAGCAGAGGGTGGCCATAGCTAGAGCAATATTGAAAGACCCATCCATTCTCCTTTTAGATGAAGCAACAAGTGCCCTGGACACAGCATCCGAAAAGCTGGTTCAAGAGGCTCTTGATACACTAATGGAAGGCCGAACAACAATTTTGATAGCACACAGGTTGTCAACTATACACAATGCAGACAGCATTGCGGTACTGCAACATGGTAAGGTAGTTGAAACCGGAGACCACCGGCAGCTCATCACCCGGCCTGGCAGCATCTATAAGCAGTTAATGAAAAGAAAAAGAACAGAGGTAGTTGGAGGGTTGGTACATTGTGATCCAAGGCACATGGGAGTAGGTACCAGTACCCACGCTCACTGCCATTTCATGTGCTTTCCCAACTTCAAGGTTGTACTCTATGGCGTAATTAGCGGATTTTTTAATTAA 3138 43.59 MEGLELRSIQISDQSPLPEKDQQSNSSPKDTVSFFGLFAAADTLDCFFMFFGSIGACIHGAALPVFFVLFGRMIDSLGRLSSDPDKLSSQVSRVPLILKHRNGNGFLSSHALYLVYLGLGVLASAWIGVAFWMQTGERQTARLRLKYLQSVLRQDINFFDTEARDKNITFHISNDAILLQDAIGDKIGHGLRYLSQFFVGFAIGFTSVWQLTLLTVAVVPLMAIAGGAYTVIMTTLSEKGEAAYAEAGKVAEEAISQVRTVYSFVGEDRAVETYSRSLQKALKLGKKSGFAKGIGIGFTYGLLFCAWALLLWYASKLVRHGDTNGGKAFTTILNVIFSGFALGQAAPNLAAIAKGRAAAANIVNMIETDSTASKRLDNGIMLPKVAGQLEFCEVCFAYPSRPSMVFENLSFSIYAGKTFAVVGPSGSGKSTIISMVQRFYEPTSGKILLDGHDIKNLRLKWLRAQMGLVSQEPALFATTIAGNILYGKEDADMDQVIEAAKAANAHSFVQGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQKALDKIMLNRTTIVVAHRLSTIRDVNKIIVLKNGQVVESGTHLELISQGGEYATLVSLQVSEHGKSPKLQPYDQNMASSSSPPIPSLWQLIKREVDHISLIFVGAAILTIFIYLLQHYFYTLMGERLTTRIRLLMFSAILSNEIGWFDLDENSTGSLTSKLAADATLVRSALADRLSTIVQNVALTVTAFVIAFTLSWRIASVIIASFPLLIGASITEQLFLKGFGGDYTRAYAQATAVAREAIANIRTVAAFGAEDRISLQFASELNQPNKQALLRGHISGFGYGFRNVSFRYPARPDLIIFKDLNLKISAGKSLAIVGQSGSGKSTVISLLSGGQKQRVAIARAILKDPSILLLDEATSALDTASEKLVQEALDTLMEGRTTILIAHRLSTIHNADSIAVLQHGKVVETGDHRQLITRPGSIYKQLMKRKRTEVVGGLVHCDPRHMGVGTSTHAHCHFMCFPNFKVVLYGVISGFFN* 1046
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12710694 12716741 + Vvi18g1146 Vvi18g1146 780849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1146 1045 Gene3D ABC transporter type 1, transmembrane domain 36 852 IPR036640 GO:0005524|GO:0016021
Vvi18g1146 1045 Gene3D - 379 626 IPR027417 -
Vvi18g1146 1045 Gene3D - 899 999 IPR027417 -
Vvi18g1146 1045 SUPERFAMILY ABC transporter transmembrane region 662 854 IPR036640 GO:0005524|GO:0016021
Vvi18g1146 1045 CDD ABC_6TM_Pgp_ABCB1_D2_like 657 853 - -
Vvi18g1146 1045 ProSitePatterns ABC transporters family signature. 899 913 IPR017871 GO:0005524
Vvi18g1146 1045 Pfam ABC transporter transmembrane region 659 856 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi18g1146 1045 Pfam ABC transporter transmembrane region 50 338 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi18g1146 1045 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 645 853 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi18g1146 1045 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 354 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi18g1146 1045 PANTHER BNAA09G27580D PROTEIN 655 853 - -
Vvi18g1146 1045 PANTHER BNAA09G27580D PROTEIN 853 899 - -
Vvi18g1146 1045 PANTHER BNAA09G27580D PROTEIN 899 995 - -
Vvi18g1146 1045 PANTHER BNAA09G27580D PROTEIN 29 647 - -
Vvi18g1146 1045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 625 IPR027417 -
Vvi18g1146 1045 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 389 624 IPR003439 GO:0005524
Vvi18g1146 1045 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 853 899 IPR039421 -
Vvi18g1146 1045 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 655 853 IPR039421 -
Vvi18g1146 1045 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 29 647 IPR039421 -
Vvi18g1146 1045 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 899 995 IPR039421 -
Vvi18g1146 1045 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 782 996 IPR003439 GO:0005524
Vvi18g1146 1045 ProSitePatterns ABC transporters family signature. 527 541 IPR017871 GO:0005524
Vvi18g1146 1045 SUPERFAMILY ABC transporter transmembrane region 37 362 IPR036640 GO:0005524|GO:0016021
Vvi18g1146 1045 CDD ABC_6TM_Pgp_ABCB1_D1_like 49 349 - -
Vvi18g1146 1045 CDD ABC_MTABC3_MDL1_MDL2 390 625 - -
Vvi18g1146 1045 Gene3D - 853 898 IPR027417 -
Vvi18g1146 1045 Pfam ABC transporter 407 555 IPR003439 GO:0005524
Vvi18g1146 1045 Pfam ABC transporter 898 927 IPR003439 GO:0005524
Vvi18g1146 1045 SMART AAA_5 415 601 IPR003593 -
Vvi18g1146 1045 SMART AAA_5 878 988 IPR003593 -
Vvi18g1146 1045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 851 996 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1146 K05658 ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2] - vvi:100259227 1548.87
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1146 Blo01g01605 . Bda01g00476 . . . . Bma01g02378 . . . Cma09g00095 . . . . . . . . . . . . . . . . . . . . Cone7ag1900 . . . . . . . . . . . . . . . . Cmo09g00092 . . . Car09g00083 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013207 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 27