Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1149 ATGTCTATCATTAACAAGGGAAATGCAGAGAAGAGAAAAGAGAAGAAGAGGCAAGTGCTTTATAGGATAGCCATGAAGAACCCTTATGCAGAAATGCTCAGTTGTGATTTCATTGAAGTTGCCAAGCTGAAACACGGCCTAGTTGCAATCCAAGTTTGCCCAGATTCTGATCCTGTTTGGAAAGAGATGCCTTCAAATTGTAGAGACGTGTGTAAATCAGAGCAGGTAAATTTTTTAAGTCCAATATGTGAAGCAAATTCAGGAGGAAAGGCTTTGAAGCGGGTGTCAAAGCATTCTTCCAAACGAGTTCCTGGGACTACTGCTGTTTTATCCATAGCCCGGAAGAAGATTACCTCCAGAAGACGTTTACGCTGTCATTCGGCAGGTCCTGAATTAGAGTTGAAGTCAATTCTCTATCCTAAAGAAAATAAAACTGGATTCAGAGATGTTGAAAGAACTAGTAATTCTGAAAGTGCATCGGTTGGTGGTGGGGGTGGAGCCTTGGAAGATGGCTTTGTCAGCCTTGTCCATGAACACGGGGAAGCTCCTTTGAGCACATCATCTCTTTGCTTAAAAGAGCTGCAAGAATCTACTCCTGGTTGGCCCCTCCTCCGAACAGCTGTTCCGGTGAGTGAGGAAGCTTTGAGTAAATCAGAAGCAAGAGAATTGTCTGTGGTCCAGTGGGTGATGAGTCTGCCTAACCGGTCATGCCCTGTAATTATGCGAACTCAGAATGAAGAAAATGATAATTCTATAGTTCATGATGAATGGGAGATCGAAACAACAAGTGTCCAAGTTGTTCAAACCTCTGAAGGCAAATCATTATATGGCAATCAGAAAGATGAGAATCTTAGCCTTCAAGCTATTCAAGCTTCTGAAGACAAATCAATGGATGGCAGTGAGAACACAGAAAATGAGGATTTTGGCCACGCTAGTGAATACAAGGGGCAAGTTTGCCTGCAACAATCAATGCTAGGTTGGCCTCTTCTCCAGAAAACAGCTTCTGCAACTCCAGAAGCCTTCAGAGAATCCAAATTAGCTAATAAATTGAGTGTGGTTCAATGGGCAATGAAACTGCCAGATCGAAACCAAATTGGCTTGGGTTCAAACACAATAGAAAGTACTCCTCTTGAAAGAGAAACCAATGATTCTGAAGTTAATGAAAACAACATTAATTCTCCGGCAGTATCAGCAAAGCTACCCAAGGAGTTGGATCTTCACAAAACAAACTCATCTGGTTGCAGATGGTTCAGCTATGAGGAGCTAAAGAGGGCAACTTCTCAATTCTCCTCAGAAAACCTCATAGGAGAGGGAGGTTGCAGCAGTGTATACAAGGGGCATCTTCCCTGCGGCCAGCCAGTGGCAGTAAAGATTTCAAAATCATACAAGGAAGCATGGAACAATTTTTCCCAGGAAATCAACATCACCACTTCGTTAAATCACAAGTACATCGCACCCCTCATTGGCATATGTGTTGAAGACAGCCATCTTATATCGGTCTATGACTTTGTACCCAAAGGAAGTTTAGAGGAAAACCTACATGGTGATCGGGTATTGCCATGGGAAGTGAGGTTCAAAGTGGCTGTTGTGGTTGCTGAAGCCCTGAATTATCTGCATGATGAATGTTCTCCGCCTGTGATTCACAGAGACATAAAATCATCAAACATTCTTCTCTCAGATGACTTTCAACCACAGCTATCTGATTTTGGGCTAGCCATAATGGGACCTACAGATTCAACTGAAATATTAGACAGTGATGTAGTAGGGACATTTGGGTATATTTCTCCGGAGTATTTCATGCATGGAAGGGTCAGTGATAAAATTGATATATATTCTTTTGGGGTGGTTCTTCTTGAGCTGTTATCTGGAAGAAGGCCAATTAATTCCAAGACCCTCACAGAAGAAGCAAGTTTGGTCAAGTGGGCAAAACCGATACTGGAGAGCGGGGACCTAGAGGCCTTGGTGGATCCAAATTTGGATGGGAAATTTGACAGTGTTCAAATGCATAGAGTAGTTCTAGCAGCAACCTCCTGTATCAATGAGTCAGCTGAACTCCGTCCTAAAGGCAGCCAGATACTCAAGCTATTACGAGGGGAGAAGGACGGGGAAGAATGGTTCAAGATGCATGTTAAAGAATTGAAGGAGCGAGGGAAGAGGGAGGATGATGAATTTGATCTGCAACTTATTTCCAAGCCATTGCTTGATGTGGAGGATTATATTACATCACATAATTGTGCAGCAGAACAAAGGAAACATTTTACATTGGAAGAATACTTGAAAGGATGA 2286 42.61 MSIINKGNAEKRKEKKRQVLYRIAMKNPYAEMLSCDFIEVAKLKHGLVAIQVCPDSDPVWKEMPSNCRDVCKSEQVNFLSPICEANSGGKALKRVSKHSSKRVPGTTAVLSIARKKITSRRRLRCHSAGPELELKSILYPKENKTGFRDVERTSNSESASVGGGGGALEDGFVSLVHEHGEAPLSTSSLCLKELQESTPGWPLLRTAVPVSEEALSKSEARELSVVQWVMSLPNRSCPVIMRTQNEENDNSIVHDEWEIETTSVQVVQTSEGKSLYGNQKDENLSLQAIQASEDKSMDGSENTENEDFGHASEYKGQVCLQQSMLGWPLLQKTASATPEAFRESKLANKLSVVQWAMKLPDRNQIGLGSNTIESTPLERETNDSEVNENNINSPAVSAKLPKELDLHKTNSSGCRWFSYEELKRATSQFSSENLIGEGGCSSVYKGHLPCGQPVAVKISKSYKEAWNNFSQEINITTSLNHKYIAPLIGICVEDSHLISVYDFVPKGSLEENLHGDRVLPWEVRFKVAVVVAEALNYLHDECSPPVIHRDIKSSNILLSDDFQPQLSDFGLAIMGPTDSTEILDSDVVGTFGYISPEYFMHGRVSDKIDIYSFGVVLLELLSGRRPINSKTLTEEASLVKWAKPILESGDLEALVDPNLDGKFDSVQMHRVVLAATSCINESAELRPKGSQILKLLRGEKDGEEWFKMHVKELKERGKREDDEFDLQLISKPLLDVEDYITSHNCAAEQRKHFTLEEYLKG* 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12763410 12766861 + Vvi18g1149 Vvi18g1149 780852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1149 761 ProSiteProfiles Protein kinase domain profile. 429 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1149 761 PANTHER OS01G0253100 PROTEIN 2 249 IPR045271 GO:0004714|GO:0006468
Vvi18g1149 761 PANTHER OS01G0253100 PROTEIN 390 743 IPR045271 GO:0004714|GO:0006468
Vvi18g1149 761 Gene3D Transferase(Phosphotransferase) domain 1 504 715 - -
Vvi18g1149 761 PANTHER PROTEIN WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN, PUTATIVE-RELATED 390 743 - -
Vvi18g1149 761 PANTHER PROTEIN WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN, PUTATIVE-RELATED 2 249 - -
Vvi18g1149 761 ProSitePatterns Serine/Threonine protein kinases active-site signature. 546 558 IPR008271 GO:0004672|GO:0006468
Vvi18g1149 761 SUPERFAMILY Protein kinase-like (PK-like) 408 696 IPR011009 -
Vvi18g1149 761 SMART serkin_6 429 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1149 761 Pfam Protein kinase domain 430 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1149 761 MobiDBLite consensus disorder prediction 367 389 - -
Vvi18g1149 761 Gene3D Phosphorylase Kinase; domain 1 392 503 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1149 - - - vvi:100264402 1511.12
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g160 Vvi18g1149 ECH
Vvi4g1322 Vvi18g1149 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1149 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . Cpe13g00644 Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . . . . . . . . . . . . . . . . . Car04g02316 . Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005074 2 4 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 0 2 1 1 1 1 1 1 1 1 0 1 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76338 PF00069 Pkinase 5.90E-41 CL0016 Vvi PK