Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1151 ATGTTGGGTCTTAACTCAGCGAGCAAGCTACAGCGGTTCCCTCATAAGCTCGCCGGTCACTTCCCCCTACCCGCTCTTGCCGTATCTGGAACTAGGTTATTGTCCGGACTGGCTCAGGATGTTCCTGCCGAGGATCCGGTGCATCCCAAGAAGTTCCTTCCAAACGACGTAGTTCTGTATCAGTACGAAGCCTGCCCTTTCTGCAACAAAGTTAAAGCATTCCTGGATTACTATGATATTGGATACAAAGTTGTGGAGGTGAACCCCATAAACAAAAAGGAGATAAAATGGTCCCAGTACAAGAAGGTGCCTATACTAACAGTTGACGGTGAACAAATGGTCGATTCATCAGATATAATTAATAAGTTGTTCCAAAGGATTCATCCTGAGAAATACCTTGATTCTGTCCCAGATGGTGATGAAGAAAGAAAATGGCTTGGGTGGGTTGATAATCACTTGGTGCATGTCTTATCTCCAAACATATACCGGAGTGCTTCTGAGGCTATCGAATCATTTGACTATATCACAACCCATGGCAATTTCAGCTTCACAGAGAGAATAATAGCAAAATATGGCGGAGCTGCAGCCATGTATTTTGTGTCAAAGAAACTGAAGAAGAGGCATAGCATCACTGATGAACGTGCCGCCTTGTATGGAGCTGCAGAAACATGGGTGGATGCTCTAAAGGGCAGGAAATTCCTTGGTGGCCTGGAACCTAATTTAGCTGATCTAGCTGTATTTGGTGTCCTGAGACCCATCCGACACCTGAAGTCTGGGAGAGACATGGTGGAACACACTGGGATTGGCGAATGGTACAGTCGAATGGAAGCTGCCGTGGGGGAGTCATCTCGAATCAAGGTGTAG 864 46.18 MLGLNSASKLQRFPHKLAGHFPLPALAVSGTRLLSGLAQDVPAEDPVHPKKFLPNDVVLYQYEACPFCNKVKAFLDYYDIGYKVVEVNPINKKEIKWSQYKKVPILTVDGEQMVDSSDIINKLFQRIHPEKYLDSVPDGDEERKWLGWVDNHLVHVLSPNIYRSASEAIESFDYITTHGNFSFTERIIAKYGGAAAMYFVSKKLKKRHSITDERAALYGAAETWVDALKGRKFLGGLEPNLADLAVFGVLRPIRHLKSGRDMVEHTGIGEWYSRMEAAVGESSRIKV* 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12776645 12781444 + Vvi18g1151 Vvi18g1151 780854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1151 287 CDD GST_C_mPGES2 140 281 IPR034335 -
Vvi18g1151 287 PANTHER GLUTATHIONE S-TRANSFERASE FAMILY PROTEIN 19 286 - -
Vvi18g1151 287 Gene3D - 137 286 - -
Vvi18g1151 287 SUPERFAMILY Thioredoxin-like 56 153 IPR036249 -
Vvi18g1151 287 SUPERFAMILY GST C-terminal domain-like 120 279 IPR036282 -
Vvi18g1151 287 ProSitePatterns Glutaredoxin active site. 59 75 IPR011767 -
Vvi18g1151 287 ProSiteProfiles Glutaredoxin domain profile. 45 140 - -
Vvi18g1151 287 Gene3D Glutaredoxin 51 128 - -
Vvi18g1151 287 Pfam Glutathione S-transferase, N-terminal domain 59 126 IPR004045 -
Vvi18g1151 287 SFLD Glutathione Transferase (cytosolic) 37 286 IPR040079 -
Vvi18g1151 287 SFLD Prostaglandin E synthase like.1 37 286 IPR034334 GO:0050220
Vvi18g1151 287 PANTHER MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 19 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1151 K05309 PTGES2; microsomal prostaglandin-E synthase 2 [EC:5.3.99.3] - vvi:100248972 586.26
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1151 . . . . . . . . Cmo05g00323 Cmo12g00348 . . . Car12g00375 Sed08g0406 . Cpe07g00352 Bhi04g00121 Tan02g2832 Cmetu03g2049 . Hepe10g0170 . Lcy13g1896 Cla08g01407 Cam08g1887 Cec08g1464 Cco08g1597 Clacu08g1579 . Cre08g1362 . . . . . . . . . . Bda08g01209 . . Bpe05g00149 . Bma05g00181 . . . Cma12g00397 Cma05g00320 Car05g00267 . Cpe11g00268 . . . . . . . . . . . . . . . Lsi08g01303 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001449 3 2 2 3 3 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 4 2 72