Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g116 ATGGTTTTGCCCAGGCGGCGACACCACAGCAATAACCGCCTCCGCTGTTTGGCTCCGATTATCGTCGTCGTCTGCGGCGGTATCCTCCTCTTCTTAGCTCTCCTCTCCTTCCTCGTTCCTCCTCCCCTAGACACCGATCACCTCCGCTCCCGCCACAACTACTTTGTCCCGTTCGGCAGTCGCGGCGAGGGTTCGAATGGAGCCGTGAAGTTTAGTGTTCCGAGTGGCGGTGGAAGATCGGATCATGACCTGTGGAGTTCGAGATTTTCGAAATTCTACTATGGATGCAGCAACGCGAGCCATAAGTTTGGAAAAGCTGTAGCTATCACAGTTCCCAATCGATTCTTGATGATTGCTACCAGTGGAGGCTTAAATCAACAGAGAACTGGGATAACTGATGCTGTTGTCGCTGCCCGCATTTTAAATGCTACTCTTGTCGTTCCAAAACTGGATCAGAAGTCCTTTTGGAGGGATGCTAGTAATTTCTCAGAGATCTTTGATGTTGATTGGTTTATTAAGTATCTATCAAAGGATGTTAAAATCATAAAACAGCTTCCTGAAAAGAAAGGGAAAACTGGGACTCCTTATACTATGCGTGTTCCAAGGAAGTGTAGTGAAAGATGCTATCAAAGTCGTGTACTACCTGTTATTTTGAAAAGGCATATTGTTCGGCTCACCAAGTTTGATTATAGACTTGCGAATAAGTTGGACACAGATCTACAGAAGCTAAGATGTAGAGTGAACTACCATGCTTTAAGGTTCACTGTTCCTATACTTGACATGGGCCGAGAATTGGTCCACCGAATGAGGATAAGAAGCAAGCATTATATTGCCCTGCACCTGAGGTTTGAACCCGATATGCTTGCATTCTCAGGATGCTACTATGGTGGGGGAGAAAAGGAAAGGAAAGAGCTGGGTGCAATACGAAAGAGGTGGAAAACTTTACATACGAGCAACCCAGACAAGGAAAGGAGGCATGGAAAATGCCCACTCACTCCAGAAGAAGTTGGTCTAATGCTGAGAGCACTGGGATATGGCAGTGATGTTCATATTTACGTGGCATCTGGTGAAGTATACGGAGGGGAAGAGACATTGGCACCTCTAAAGGCACTCTTCCCAAATTTCTATTCAAAAGACACTATAGGCCGGAAAGAGGAACTGCAACCATTTGCTGCATTTTCTGCTCGCATGGCTGCACTTGACTTCATAGTTTGTGATGAAAGTGATGTATTTGTTACCAACAACAATGGAAACATGGCTAAAATATTAGCTGGGCGAAGGAGATATTTTGGACACAAGCCTACCATTCGTCCAAATGCCAAAAAACTATCTCGGTTGTTCCTGAATAAAGGTAACACGAGTTGGGAAGTGTTTGCCTCTAGAGTCCGTATTTATCAGAGAGGCTTCATGGGGGAGCCGAATGAGGTGAGGCCAGGCAGAGGCGAGTTTCATGAGAACCCATCCTCCTGCATATGTGAAGAGTCTGGGGCTAATGCAAAGAGAGATTCGGGTTCTCAAAAATCTGGGAAGGAGAGTAATGCCACAAGAAAAGATTTTGATGAAGATGATCAGAATATGGATGATGAGCTAGAATGGATGGATCCAGATGATGAAGAGGATCAAACTGGCCCTCAGGAGACTGGCCTAGCAAATGGAACAGGCTTGGATTATGGTGTACTCGCATCTGAGGAGCCTGAGTTGGAAGAGATGCTTTCAGACTAA 1722 45.64 MVLPRRRHHSNNRLRCLAPIIVVVCGGILLFLALLSFLVPPPLDTDHLRSRHNYFVPFGSRGEGSNGAVKFSVPSGGGRSDHDLWSSRFSKFYYGCSNASHKFGKAVAITVPNRFLMIATSGGLNQQRTGITDAVVAARILNATLVVPKLDQKSFWRDASNFSEIFDVDWFIKYLSKDVKIIKQLPEKKGKTGTPYTMRVPRKCSERCYQSRVLPVILKRHIVRLTKFDYRLANKLDTDLQKLRCRVNYHALRFTVPILDMGRELVHRMRIRSKHYIALHLRFEPDMLAFSGCYYGGGEKERKELGAIRKRWKTLHTSNPDKERRHGKCPLTPEEVGLMLRALGYGSDVHIYVASGEVYGGEETLAPLKALFPNFYSKDTIGRKEELQPFAAFSARMAALDFIVCDESDVFVTNNNGNMAKILAGRRRYFGHKPTIRPNAKKLSRLFLNKGNTSWEVFASRVRIYQRGFMGEPNEVRPGRGEFHENPSSCICEESGANAKRDSGSQKSGKESNATRKDFDEDDQNMDDELEWMDPDDEEDQTGPQETGLANGTGLDYGVLASEEPELEEMLSD* 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1136684 1144425 + Vvi18g116 Vvi18g116 779819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g116 573 MobiDBLite consensus disorder prediction 504 521 - -
Vvi18g116 573 PANTHER O-FUCOSYLTRANSFERASE 16 8 573 - -
Vvi18g116 573 MobiDBLite consensus disorder prediction 522 543 - -
Vvi18g116 573 MobiDBLite consensus disorder prediction 494 573 - -
Vvi18g116 573 PIRSF UCP009360 3 500 IPR024709 -
Vvi18g116 573 Pfam GDP-fucose protein O-fucosyltransferase 115 429 IPR019378 -
Vvi18g116 573 PANTHER O-FUCOSYLTRANSFERASE 16 8 573 - -
Vvi18g116 573 CDD O-FucT_plant 115 435 IPR024709 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g116 - - - vvi:100267646 1157.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g240 Vvi18g116 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g116 Blo01g01624 Blo12g00860 . Bda03g00313 Bpe02g00318 Bpe04g00274 Bma04g00281 Bma01g02399 . . Cma01g02008 Cma09g00062 Car01g01577 . . Cpe06g00029 . . . . . . . . . . . . . . . Cone4ag2012 Cone7ag1927 . Cone20ag0032 Lsi04g01798 Csa04g02692 . . . . Bda11g00961 . . . . . . Cmo01g02066 Cmo09g00063 . . . Car09g00054 . Cpe02g00041 Bhi09g02913 . . . . . . Cla11g01817 Cam11g1883 Cec11g1906 Cco11g1915 Clacu11g2047 Cmu11g1852 Cre11g2257 . . Chy07g00383 Cme07g00064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000949 2 15 2 3 3 1 3 2 1 2 1 2 3 2 2 3 1 5 3 2 2 2 2 2 2 2 1 5 3 2 81