Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1160 ATGAACACTACACCACCTACATCAACACCCAACCATGCCATATTCCTACCGAGGAACGAAACATTTCCAGCCGTGCTAGTTTTCGGAGATTCGATAGTGGATCCGGGCAATAACAACAATCTTAGTACTGTGGTTAAGTGCAATTTTCCACCGTATGGGAGGGACTTCGTGGGAGGATTTCCAACTGGAAGATTTAGCAATGGCAAAATTCCGCCTGACTTCATTGCTGAAGAATTGGGAATCAAAAATCTACTGCCACCATATTCTAGCCCGTCTCTTCAACTTGGTGATCTCCTGACTGGAGTGAGCTTCGCCTCAAGTGGCTCAGGATTTGATCCTCTAACACCTAAGCTTGTGTCAGTTTTATCTCTGCGGGATCAATTAGGAATGTTCAAAGAATACATAGGAAAGTTGAAAGTGATGGTTGGAGAAGAGAGAACAAACACCATTTTAAGCAAAAGCTTATTTCTAGTAGTAGCAGGCAGTGATGACATTGCCAATTCATACTTTGTCATCGGCGTTCGGAAACGCCAGTATGATGTTCCGGCTTACACTGATTTTATGGCCACCTCGGCTGCTTCTTTCTTGAAGGAATTGTATGGATTGGGGGCACGAAGAATAGGTGTTGCCAGTGCACCTCCATTGGGGTGTCTGCCATCACAGAGAAGCTTAGCAGGAGGGAAACAAAGAGAGTGTGCTGAGGATCACAACGAAGCTGCGAAGCTGTTCAACACCAAGCTCTCGTCTCAATTGGATTCTCTCAACGCCAATTCTCCCCAGGCAAAGTTTGTCTACATTGATATTTACAAACCCTTTCTCGATCTCATCCAAAACCCTCAAAAATCAGGGTTTGAAGTGGTGGATAAAGGTTGTTGTGGCACAGGGAGAATAGAGGCGGCAGCACTATGTAGCCTATTAAGTTCATTTACTTGTGAAGACGCGTCAAATTATGTATTTTGGGATAGTTATCATCCTACAGAAAGAGCATACAAGGTTATAATAGAGAAGATCATCCAGAAATGCGTGGACGGCTTCTTCTGA 1041 44.19 MNTTPPTSTPNHAIFLPRNETFPAVLVFGDSIVDPGNNNNLSTVVKCNFPPYGRDFVGGFPTGRFSNGKIPPDFIAEELGIKNLLPPYSSPSLQLGDLLTGVSFASSGSGFDPLTPKLVSVLSLRDQLGMFKEYIGKLKVMVGEERTNTILSKSLFLVVAGSDDIANSYFVIGVRKRQYDVPAYTDFMATSAASFLKELYGLGARRIGVASAPPLGCLPSQRSLAGGKQRECAEDHNEAAKLFNTKLSSQLDSLNANSPQAKFVYIDIYKPFLDLIQNPQKSGFEVVDKGCCGTGRIEAAALCSLLSSFTCEDASNYVFWDSYHPTERAYKVIIEKIIQKCVDGFF* 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12863065 12871523 + Vvi18g1160 Vvi18g1160 780863

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1160 346 Pfam GDSL-like Lipase/Acylhydrolase 25 337 IPR001087 GO:0016788
Vvi18g1160 346 Gene3D SGNH hydrolase 14 342 IPR036514 -
Vvi18g1160 346 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 12 343 - -
Vvi18g1160 346 CDD SGNH_plant_lipase_like 23 340 IPR035669 -
Vvi18g1160 346 PANTHER GDSL ESTERASE/LIPASE EXL3 12 343 - -
Vvi18g1160 346 SUPERFAMILY SGNH hydrolase 25 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1160 - - - vvi:100242089 664.455
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1160 . . . . Bpe02g00337 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00389 . . . Cpe11g00272 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001408 2 2 3 2 2 2 3 1 2 2 1 3 2 2 2 2 2 5 3 1 2 4 4 2 3 1 2 2 2 7 73