Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1164 ATGCTGATTTTGTTAAAGTTGATCAGGCCACCCTATTTGATCTCATTCTGGCATTTGGGCACCATTGAACAAAATGCGCCCGGGGCATTCCTTGCCACATTTTTTTCCCCATATTTTCTTCTGATAGGCAGGACACCGGTAGCCACTTTTATTACAATCCGTTTGAGATCTTTAACACGTCCAGGTAAAGAGGCAGCAAACTATCTGAACATCAAGAGTCTCCTGGATCTTACTTGTCAGACTGTGGCTGACATGATAAAGGGCAAGACTCCAGAGGAGATTCGCAAAACTTTCAATATCAAAAATGATTTTACACCGGAGGAAGAGGAGGAGGTGCGGCGGGAGAACCAGTGGGCCTTTGAGTGA 366 45.08 MLILLKLIRPPYLISFWHLGTIEQNAPGAFLATFFSPYFLLIGRTPVATFITIRLRSLTRPGKEAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE* 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12900788 12904974 + Vvi18g1164 Vvi18g1164 780867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1164 121 PANTHER SKP1 65 121 IPR016897 GO:0006511
Vvi18g1164 121 Gene3D Potassium Channel Kv1.1; Chain A 4 121 IPR011333 -
Vvi18g1164 121 Pfam Skp1 family, dimerisation domain 72 119 IPR016072 GO:0006511
Vvi18g1164 121 PANTHER - 65 121 - -
Vvi18g1164 121 SUPERFAMILY Skp1 dimerisation domain-like 64 119 IPR036296 GO:0006511
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1164 K03094 SKP1, CBF3D; S-phase kinase-associated protein 1 - qsu:112036477 114.775
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi3g170 Vvi18g1164 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1164 . . . Bda03g00294 . Bpe04g00254 Bma04g00254 . . . . . . Car12g00369 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000912 2 2 2 2 2 3 4 3 3 2 3 3 3 3 3 3 3 2 5 3 2 3 3 3 2 3 3 4 3 4 86