Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1167 ATGGACGAAGTCTGGAAAGATTTGAGCCTCTCTTCTCTTCATCACCACTCCATCAGCACCGTCAACAATGCTACCACCAACACCCACCATGCATTTCGTAGCACCCTCCTTCAGGACTTCTTGGCTCGACCTTCCAATATGGACCCACTTAGAACAGGCACCTCTACTGCTGATCCCTCCTCCGCCGGAGCTGCCACTCCCTTCGCATCTCCCCTTCCTCCTCCGCCCACCCTCTTGAGCTTGAATTCACTCCCTGATTTTCATTGCATTGACGACACTGATCCCATGAAGCCGCACTCTCATTTGCACAATAACGCCACTGCTGCTACGCCCTATCTGCCCCGAGGAAGTGACGATAATTCTGGCGATCGGCGACATAAACGCCTCATCAAGAACAGAGAGTCAGCTGCACGCTCCAGGGCTAGAAAACAGGCTTACACAAACGAGTTGGAGCTGGAAGTTGCCCACTTGATAGAGGAGAATGCAAGGCTGAAAAGACTGCAACAAAAGTTCTGCCCAGAAGCTTCTGCTCAGCTTCCAAAAAAGCACACACTCTACAGAACCTCAACTGCCCCATTTTGA 582 51.55 MDEVWKDLSLSSLHHHSISTVNNATTNTHHAFRSTLLQDFLARPSNMDPLRTGTSTADPSSAGAATPFASPLPPPPTLLSLNSLPDFHCIDDTDPMKPHSHLHNNATAATPYLPRGSDDNSGDRRHKRLIKNRESAARSRARKQAYTNELELEVAHLIEENARLKRLQQKFCPEASAQLPKKHTLYRTSTAPF* 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12936463 12938187 - Vvi18g1167 Vvi18g1167 780870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1167 193 MobiDBLite consensus disorder prediction 95 125 - -
Vvi18g1167 193 MobiDBLite consensus disorder prediction 44 77 - -
Vvi18g1167 193 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 127 142 IPR004827 GO:0003700|GO:0006355
Vvi18g1167 193 SMART brlzneu 120 181 IPR004827 GO:0003700|GO:0006355
Vvi18g1167 193 CDD bZIP_plant_BZIP46 124 178 - -
Vvi18g1167 193 Pfam bZIP transcription factor 124 166 IPR004827 GO:0003700|GO:0006355
Vvi18g1167 193 Coils Coil 147 167 - -
Vvi18g1167 193 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 122 166 IPR004827 GO:0003700|GO:0006355
Vvi18g1167 193 PANTHER PROTEIN FD-LIKE 1 193 - -
Vvi18g1167 193 MobiDBLite consensus disorder prediction 48 63 - -
Vvi18g1167 193 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 1 193 IPR043452 GO:0003700|GO:0045893
Vvi18g1167 193 SUPERFAMILY Leucine zipper domain 124 169 IPR046347 GO:0003700|GO:0006355
Vvi18g1167 193 Gene3D - 123 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1167 K14432 ABF; ABA responsive element binding factor - vvi:100266063 341.273
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1167 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g00152 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005347 1 0 1 2 3 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14271 PF00170 bZIP_1 1.90E-12 CL0018 Vvi TF