Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1169 ATGGCTCAGACAACCCCGAATCACACACAGACTGTTTCTGGGTGGGCAGCTCATGATTCCTCCGGCAAGATCACCCCGTACGTCTTCAAGAGAAGAGAAAACGGCCCCAATGATGTTACCATTGAAATCTTGTACTGTGGGATATGCCACACTGATCTCCACCATGTCCGGAATGACTGGGGCATCACCATGTATCCGGTTGTCCCCGGGCATGAAATTACTGGGGTTGTCACCAAGGTAGGAACCAACGTGACAAGGTTCAAAACAGGGGACAGGGTAGGAGTAGGATGCTTGGCGGCATCATGTTTGGAGTGTGAGTTCTGCAAGAGCTCTCAGGAGAACTACTGTGATCAGATTCAGTTTACCTACAATGGTATTTTCTGGGATGGTAGCATCACCTATGGTGGATACTCCAGAATGTTGGTTGCAGATCAGAGGTATGTGGTTCGGGTGCCGGAGAATTTGCCAATGGATGCAGTGGCTCCAATGTTATGTGCGGGAATAACAGTGTACAGCCCCATGAAAGACACCAAGATGCTAGAGTCACCGGGGAAGAAGCTAGGAATAATCGGTTTGGGAGGACTAGGTCATGTTGCAGTTAAATTTGCAAAGGCTTTTGGCCTCCATGTGACCATCATCAGCACCTCTCCCTCAAAAGAGAAAGAGGCGAAAGAGCGCCTGGGTGCAGACCATTTCATAGTTAGCACCAACCCCAAACAAATGCAGGCAGGGAAGAGGAGCCTGGACTTCATACTGGACACAGTGTCTGCGAACCACTCCCTGGGGCACTACTTGGAACTGCTGAAGGTGAACGGGACAATGGTGATCGTGGGCGCACCAGAGAAGCCCATGGAGCTGCCGTCTTTCCCTCTGATATTCGGGAAGAGAACGGTGAAGGGAAGCATGACAGGAGGGATGAACGAGACGCAGGAGATGATGGATGTGTGTGGAAAGCACAACATCACATGTGATATTGAGGTGGTGAAACCAGACCAGATTAATGAAGCCCTCGAGCGCCTTGCAAACAATGATGTTCGGTATCGTTTCGTCATCGATATTGCTGGCCAGTCTCCAAATCTTTAG 1083 50.14 MAQTTPNHTQTVSGWAAHDSSGKITPYVFKRRENGPNDVTIEILYCGICHTDLHHVRNDWGITMYPVVPGHEITGVVTKVGTNVTRFKTGDRVGVGCLAASCLECEFCKSSQENYCDQIQFTYNGIFWDGSITYGGYSRMLVADQRYVVRVPENLPMDAVAPMLCAGITVYSPMKDTKMLESPGKKLGIIGLGGLGHVAVKFAKAFGLHVTIISTSPSKEKEAKERLGADHFIVSTNPKQMQAGKRSLDFILDTVSANHSLGHYLELLKVNGTMVIVGAPEKPMELPSFPLIFGKRTVKGSMTGGMNETQEMMDVCGKHNITCDIEVVKPDQINEALERLANNDVRYRFVIDIAGQSPNL* 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12954357 12956416 + Vvi18g1169 Vvi18g1169 780872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1169 360 SMART PKS_ER_names_mod 19 351 IPR020843 GO:0016491
Vvi18g1169 360 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Vvi18g1169 360 Pfam Zinc-binding dehydrogenase 194 315 IPR013149 -
Vvi18g1169 360 Gene3D - 15 353 - -
Vvi18g1169 360 SUPERFAMILY GroES-like 18 181 IPR011032 -
Vvi18g1169 360 CDD CAD1 14 352 - -
Vvi18g1169 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 321 IPR036291 -
Vvi18g1169 360 Pfam Alcohol dehydrogenase GroES-like domain 36 151 IPR013154 -
Vvi18g1169 360 Gene3D - 166 323 - -
Vvi18g1169 360 PANTHER ALDEHYDE REDUCTASE 1 357 - -
Vvi18g1169 360 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 6-RELATED 1 357 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g1203 Vvi18g1169 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1169 K00083 - vvi:100262607 723.391