Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g1171 | ATGGGTGTGAATGCAGCTTCTGTACTCAATCGACTTCTTCAGCGCAACACCCACAAGCCTAAAGCTCTACCCACCGACTCCAAAGCCTTAACCACAACAACTGTCCTTACTCACCTCAACGCCGGTCGCCTCCGAAAAGCCGTATCCATCCTCTTTGCTTCCCCAGTTCCCTTCCCCTTTTCACTCTATGCTCGCCTTTTCCAGATTTGTTCTTCCAATCTTGCAATCGTTGAGGCCCGTAAAGTGGAATCCCACTTGATTACCTTCTCGCCTGCACCGCCGATCTTTCTTTTGAACCGTGCGATTGAAACCTATGGAAAATGCAGTTGTTTGGATGATGCTAGGGAGCTGTTTGAGGAAATGCCCCAAAGGGATGGTGGTTCGTGGAATGCGATGATCACGGCCTATGCGCAAGGTGGGTGTGCGGAGAAGGCGTTGTGGTTGTTCTCGAGGATGAATAGATTGGGGATTTGGGCTAATGAGATCACGTTTGCTAGTGTTCTTGGATCTTGTGCTACAGTATTGGCACTGTTTCTTTCGAAGCAGATTCATGGGCTTATCGTGAAATATGGTTTTTGCTGGAACGTAATTTTGGGGAGTTCTCTGGTTGATATATATGGGAAATGTCGGGTTATGAGTGATGCACGTAGAATGTTTGATGAAATTGAGAATCCAAATGCCATTTCCTGGAATGTGATTGTCAGGCGGTATCTTGAGATGGGTAATGAAAAGGAAGCAGTTGTTATGTTTTTTAAGATGATCCGAGCAAACATTAGGCCATTGAATTTTACATTCTCCAATGCTCTTATTGCTTGTTCTAGTATATCTGCACTCCAGGAGGGGATTCAGATTCATGGAGTTGCAATTAGGATTGGTTATGACGAGGATGAGGTGGTTTCTAGCTCTCTTATTGATATGTATGCAAAATGTGGGGATTTGGAGAGCGCTTGTAGGATTTTTGAACTGCCCAGTTCAAAAAATTTGATCTCCTGGACTTCAATTGTGTCGGGGTATGCAATGAGTGGGCAAACAAGAGAGGCAAGAGTGCTCTTCGATGAGATGCCAGAAAGGAGTGTAATCTCATGGAATGCAATGTTAGCAGGGTATACACATTTCTGCCAATGGGAAGAGGCTTTGGAATTTGTTTTTCTGATGCGCAAAGCAACTCAAGACATTGACCATGTCACTGTTGGGTTAATCCTAAATGTGTGTGCTGGTCTTTCAGATGTTGAATCGGGAAAACAGGTTCATGGGTTTATCTATAGGCATGGTCTCTATTCCAATCTCTTTGTTGGCAATGCACTTCTTCACATGTATGGGAAATGTGGGAACTTGAGAAGCACAAGACTTTGGTTCTACCAGATGAGTCATTGGCGAGATAGGATTTCTTGGAATGCTCTATTGACTAGCCATGCTCGCCATGGCTTGAGTGAAGAAGCTATGACAATTTTTGGGGAGATGCAATGGGAGACAACGCCATCTAAATTTACGCTTGGTACACTTTTGTCAGCTTGTGCAAATATTTTTGCGCTTGAGCAAGGTAAACAAATCCATGGGTTTATGATTAGAAATGGTTATGAGATAGATGTTGTTGCCAGAGGAGCTTTGGTAGACATGTATTCCAAATGTCGATGTCTTGAATATGCCCTCAAGGTTTTTAAAGAGGCTCCTTCACGGGATTTGATTCTTTGGAACTCCATGATTTTGGGATGTTGTCACAATGGAAGGGGTAGAGATGTACTTGGACTGTTTGGATTGATGGAGGAAGAAGGGGTTAAGCCTGACCACATCACCTTTCAGGGTATTTTGCTTGGTTGTATTTGTGAGGGTCTTGCTGGGTTAGGTACTGAGTATTTTAATTCAATGAGCAACAAGTACTGTATCATACCTCGATTGGAGCATTATGAGTCCATGATTGAACTGTATGGTAGGCATGGGTTCATGGATGAGCTTGAGGATTTCATTAAGAGGATGCCATTTGAGCCCACTGTTGCAATGTTGACAAGAGTCTTCAATGCTTGCAGTGAACATGGTCACTCAAGGTTGGGAAAATGGGCTGCTGAACAACTAAATGAATTGAATCCTTCAACTCCATTTCATTTTCAAATTTTGGACAGAAGCAGAAATCTTTATCACCGTTGTATACCAATGGAAGATCACAGTGACGCCGTCGAATCAAACAATCCGGGAGGAGGAGGAGGAGAAGAAGAAGAGTTGCAGAGACTGCTGGTACCTGATGTACACAATCTTCCACTCTTTCCCCCTTCTGCTGTTCAATCCAACTTCGTTTCCTATTTCGCTCCAGATTTTATGAAGCCAGGACACGATCAGTACGTTTATCGCCACGCCAATGGATTGTGCGTAATCGGTTTGGCTCCTTCGCACGTCGCTCTTACGGAGAAAGGAGGAGTTACAGCCGTTGATTTCAATGTTGGGAAGACTGATCGAAGTGGGATTAAGGTTACCGGAAAGCGCAAGAAGAATGCACAACACTTTGAATCCAACTCAGCTTTGTGTAAAGTGTGCACCAATGATGCTTCTTATATAGTGAGATGTTGTGTAAAAGGCAATCTACTGGAAGTGAATGATAGATTAATCAAGCAGCCAGGATTGCTTAATTCATCGGCTGACAGAGAAGGATACATTGCAATTATCATGCCAAAACCAGCTGATTGGCTCAAGGTCAAGGCTTCACTGATTGACATTGAAGAATACAAGAAACTGAAAGAAGTGTGTTGA | 2739 | 43.48 | MGVNAASVLNRLLQRNTHKPKALPTDSKALTTTTVLTHLNAGRLRKAVSILFASPVPFPFSLYARLFQICSSNLAIVEARKVESHLITFSPAPPIFLLNRAIETYGKCSCLDDARELFEEMPQRDGGSWNAMITAYAQGGCAEKALWLFSRMNRLGIWANEITFASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDIYGKCRVMSDARRMFDEIENPNAISWNVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQEGIQIHGVAIRIGYDEDEVVSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQTREARVLFDEMPERSVISWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHVTVGLILNVCAGLSDVESGKQVHGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHGLSEEAMTIFGEMQWETTPSKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVARGALVDMYSKCRCLEYALKVFKEAPSRDLILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKPDHITFQGILLGCICEGLAGLGTEYFNSMSNKYCIIPRLEHYESMIELYGRHGFMDELEDFIKRMPFEPTVAMLTRVFNACSEHGHSRLGKWAAEQLNELNPSTPFHFQILDRSRNLYHRCIPMEDHSDAVESNNPGGGGGEEEELQRLLVPDVHNLPLFPPSAVQSNFVSYFAPDFMKPGHDQYVYRHANGLCVIGLAPSHVALTEKGGVTAVDFNVGKTDRSGIKVTGKRKKNAQHFESNSALCKVCTNDASYIVRCCVKGNLLEVNDRLIKQPGLLNSSADREGYIAIIMPKPADWLKVKASLIDIEEYKKLKEVC* | 913 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 12964007 | 12971832 | - | Vvi18g1171 | Vvi18g1171 | 780874 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1171 | 912 | TIGRFAM | PPR: pentatricopeptide repeat domain | 360 | 387 | IPR002885 | - | |
| Vvi18g1171 | 912 | TIGRFAM | PPR: pentatricopeptide repeat domain | 329 | 358 | IPR002885 | - | |
| Vvi18g1171 | 912 | TIGRFAM | PPR: pentatricopeptide repeat domain | 228 | 260 | IPR002885 | - | |
| Vvi18g1171 | 912 | TIGRFAM | PPR: pentatricopeptide repeat domain | 462 | 488 | IPR002885 | - | |
| Vvi18g1171 | 912 | TIGRFAM | PPR: pentatricopeptide repeat domain | 563 | 595 | IPR002885 | - | |
| Vvi18g1171 | 912 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 125 | 159 | IPR002885 | - | |
| Vvi18g1171 | 912 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 4 | 482 | - | - | |
| Vvi18g1171 | 912 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 562 | 695 | - | - | |
| Vvi18g1171 | 912 | Pfam | PPR repeat family | 560 | 606 | IPR002885 | - | |
| Vvi18g1171 | 912 | Pfam | Glycine cleavage H-protein | 814 | 909 | IPR033753 | - | |
| Vvi18g1171 | 912 | Gene3D | - | 772 | 910 | - | - | |
| Vvi18g1171 | 912 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 479 | 567 | - | - | |
| Vvi18g1171 | 912 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 562 | 695 | - | - | |
| Vvi18g1171 | 912 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 226 | 260 | IPR002885 | - | |
| Vvi18g1171 | 912 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 327 | 361 | IPR002885 | - | |
| Vvi18g1171 | 912 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 560 | 594 | IPR002885 | - | |
| Vvi18g1171 | 912 | PANTHER | REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED | 4 | 482 | - | - | |
| Vvi18g1171 | 912 | SUPERFAMILY | Single hybrid motif | 768 | 909 | IPR011053 | - | |
| Vvi18g1171 | 912 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 460 | 494 | IPR002885 | - | |
| Vvi18g1171 | 912 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 479 | 567 | - | - | |
| Vvi18g1171 | 912 | Pfam | PPR repeat | 102 | 124 | IPR002885 | - | |
| Vvi18g1171 | 912 | Pfam | PPR repeat | 128 | 157 | IPR002885 | - | |
| Vvi18g1171 | 912 | Pfam | PPR repeat | 635 | 658 | IPR002885 | - | |
| Vvi18g1171 | 912 | Pfam | PPR repeat | 228 | 258 | IPR002885 | - | |
| Vvi18g1171 | 912 | Pfam | PPR repeat | 535 | 558 | IPR002885 | - | |
| Vvi18g1171 | 912 | Pfam | PPR repeat | 462 | 488 | IPR002885 | - | |
| Vvi18g1171 | 912 | Pfam | PPR repeat | 301 | 321 | IPR002885 | - | |
| Vvi18g1171 | 912 | Pfam | PPR repeat | 329 | 358 | IPR002885 | - | |
| Vvi18g1171 | 912 | Pfam | PPR repeat | 360 | 387 | IPR002885 | - | |
| Vvi18g1171 | 912 | Gene3D | Tetratricopeptide repeat domain | 281 | 410 | IPR011990 | GO:0005515 | |
| Vvi18g1171 | 912 | Gene3D | Tetratricopeptide repeat domain | 512 | 611 | IPR011990 | GO:0005515 | |
| Vvi18g1171 | 912 | Gene3D | Tetratricopeptide repeat domain | 411 | 511 | IPR011990 | GO:0005515 | |
| Vvi18g1171 | 912 | Gene3D | Tetratricopeptide repeat domain | 58 | 174 | IPR011990 | GO:0005515 | |
| Vvi18g1171 | 912 | Gene3D | Tetratricopeptide repeat domain | 612 | 694 | IPR011990 | GO:0005515 | |
| Vvi18g1171 | 912 | Gene3D | Tetratricopeptide repeat domain | 175 | 280 | IPR011990 | GO:0005515 |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g1171 | - | - | - | vvi:100253985 | 1442.56 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g1171 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cpe06g00053 | Cpe13g00653 | Bhi04g00088 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone20ag0415 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0012345 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 0 | 1 | 1 | 1 | 1 | 29 |