Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1172 ATGGAGTTCAGACACAAAATTTTGGATTTTGATCCATATACCAAAGTGGGTTTGGTGAATATTGAAAGACAAGTAACACTCCAAAATCACCCTTTTGTGTGCAATGAGATGGTGGATCTTGATCTGCATTCCTTGGCCCGCCAACTGGGATCGTGCAACAACTACGGCTCCATCTACCGAGGAAGACTGCTTCACATCCTTTTCCTCAAATCTGGCGTTCTCCATTCTGTTCTTTCAATTGGAAACCGTCTTCTACAGATGTATTCTAGGTGCAACAGCATGAGGGAGGCGCAGCAACTGTTTGAAGAAATGCCGAAAAGAAATTGTTTCTCTTGGAACACTATGATTGAAGGGTATTTGAAATCAGGGAGCAAAGGGAAGTCACTAGAGTTGTTTGATTCAATGCCCCACAAGGATGCTTTTTCATGGAACGTGGTCATTTCGGGTTTTGCAAAAGAGGGTAATTTGGAGGTTGCCCGGCGTTTGTTCAATGAGATGCCTTGGAAGAATGGGATTGCTTGGAATTCGATGATTCATGGTTATGCCTGCAACGGTCGCCCAAAAGAAGCTGTTGGGTTGTTTAAGGATTTGAGTTTGAATCCGCTGGAACGGTTTTGTGGGGATACGTTTGTTCTGGCTACAGTTGTTGGTGCTTGTACCAATTTGGGGGCTCTTGATTGTGGGAAGCAAATACATGCTCGCATTGTTGTTGATGAAGTGGAATTTGACTCAGTCTTGGGGAGTTCCCTTGTTAACTTGTATGGGAAATGTGGGGATATCGACAGTGCAAATCATGTTTTGAATTTGATGAAGGAGCCAGATGCATTCTCTTTATCTGCATTGATATCAGGATATGCAAGTTGTGGTAGAATGAATGATGCAAGAAGAATTTTTTGTTTGAAAAGTAACGCATGTGTGGTGTTGTGGAACTCCATGATTTCTGGATATGTAGCCAATAATGAAGCATTAGAAGCACTAGAGCTCTTTAATAATATGCGAAGAAAAGGAGTTCAGGAAGACTACTCTACTTTTGCCAGTGTTTTGAGTGCATGCAGTACCTTAGGTATTATTGATCAGGGTATACAAGTGCATGCTCATGTTTATAAAGTTGGGTTCACTAATGATATTATCATCGATAGTGCTCTTGTTGACATGTATTCTAAGTGCAGAAGGCCTGATGATGCTTGCAAATTATTTAGTGATCTTCAAGCCTATGACACCATCTTGCTCAATTCTATGATAACCGTCTTGATCTCATGGAATTCAATGATAGTGGGTTTCAGTCAAAATGCTTGTCCAATTGAAGCATTAGACCTTTTCTGTGAGATGAATAAACTGGGCCTGAGGATGGACAAGTTTAGCCTGGCTGGTGTGATCAGTGCCTGTGCTAGCATCTCTTCACTTGAGCTTGGTGAACAGATTTTTGCTAGGGCTACTATCATCGGACTTGAATTTGATCAGATCATTTCCACCTCCCTTGTGGATTTCTATTGTAAGTGTGGCTTAGTTGAACATGGGCGAAAACTGTTTGACAGAATGATGAAATCTGATGAAGTCCCATGGAACTCTATGTTGATGGGTTATGCTACAAATGGCCATGGAATTGAAGCCTTGAATGTATTTGATCAAATGAGAAGTGTGGGTGTACAACCCACTGATATTACATTTGTTGGGGTTCTGTCTGCCTGTGATCATTGTGGGCTGGTTGAAGAGGGTCGAAAATGTTATTTTATTAAATATACTTAA 1746 41.18 MEFRHKILDFDPYTKVGLVNIERQVTLQNHPFVCNEMVDLDLHSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKCYFIKYT* 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12980372 12985434 + Vvi18g1172 Vvi18g1172 780875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1172 581 TIGRFAM PPR: pentatricopeptide repeat domain 491 520 IPR002885 -
Vvi18g1172 581 TIGRFAM PPR: pentatricopeptide repeat domain 307 337 IPR002885 -
Vvi18g1172 581 TIGRFAM PPR: pentatricopeptide repeat domain 521 552 IPR002885 -
Vvi18g1172 581 TIGRFAM PPR: pentatricopeptide repeat domain 110 136 IPR002885 -
Vvi18g1172 581 TIGRFAM PPR: pentatricopeptide repeat domain 418 451 IPR002885 -
Vvi18g1172 581 TIGRFAM PPR: pentatricopeptide repeat domain 141 175 IPR002885 -
Vvi18g1172 581 TIGRFAM PPR: pentatricopeptide repeat domain 173 197 IPR002885 -
Vvi18g1172 581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Vvi18g1172 581 Gene3D Tetratricopeptide repeat domain 203 322 IPR011990 GO:0005515
Vvi18g1172 581 Gene3D Tetratricopeptide repeat domain 35 202 IPR011990 GO:0005515
Vvi18g1172 581 Gene3D Tetratricopeptide repeat domain 352 466 IPR011990 GO:0005515
Vvi18g1172 581 PANTHER OS03G0849700 PROTEIN 150 197 - -
Vvi18g1172 581 PANTHER OS03G0849700 PROTEIN 206 417 - -
Vvi18g1172 581 PANTHER OS03G0849700 PROTEIN 41 140 - -
Vvi18g1172 581 PANTHER OS03G0849700 PROTEIN 417 576 - -
Vvi18g1172 581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 138 IPR002885 -
Vvi18g1172 581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 516 IPR002885 -
Vvi18g1172 581 PANTHER OS07G0578800 PROTEIN-RELATED 41 140 IPR045215 GO:0003723|GO:0009451
Vvi18g1172 581 PANTHER OS07G0578800 PROTEIN-RELATED 150 197 IPR045215 GO:0003723|GO:0009451
Vvi18g1172 581 PANTHER OS07G0578800 PROTEIN-RELATED 206 417 IPR045215 GO:0003723|GO:0009451
Vvi18g1172 581 PANTHER OS07G0578800 PROTEIN-RELATED 417 576 IPR045215 GO:0003723|GO:0009451
Vvi18g1172 581 Pfam PPR repeat family 517 563 IPR002885 -
Vvi18g1172 581 Pfam PPR repeat family 305 351 IPR002885 -
Vvi18g1172 581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Vvi18g1172 581 Pfam PPR repeat 82 109 IPR002885 -
Vvi18g1172 581 Pfam PPR repeat 248 272 IPR002885 -
Vvi18g1172 581 Pfam PPR repeat 277 299 IPR002885 -
Vvi18g1172 581 Pfam PPR repeat 380 403 IPR002885 -
Vvi18g1172 581 Pfam PPR repeat 110 137 IPR002885 -
Vvi18g1172 581 Pfam PPR repeat 141 169 IPR002885 -
Vvi18g1172 581 Pfam PPR repeat 418 448 IPR002885 -
Vvi18g1172 581 Pfam PPR repeat 173 197 IPR002885 -
Vvi18g1172 581 Pfam PPR repeat 491 516 IPR002885 -
Vvi18g1172 581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Vvi18g1172 581 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Vvi18g1172 581 Gene3D Tetratricopeptide repeat domain 467 578 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1172 - - - vvi:100264292 1077.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1172 . . . . Bpe02g00620 . . Bma01g02099 . Cmo15g00648 . . . . . . . . . . . . . . Cla08g00647 . . . . . . Cone4ag1444 . . . . . . . . . . . . . . . . . . Cma12g00384 . . Car15g00587 Cpe11g00286 . . . . . . . . . . . . . . . Lsi08g01280 . Chy03g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016657 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 6