Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1173 ATGCAACCATTTCTCAAGAAAGCTCATGGGCCTCTCGCAACCTCACTCTCCTATTATTCTAACCTCATAGAACATTGTTTCTTGCTGAAATCCTTAGACTATGCTAAATTCGTCCATGCCCAGTTGATTAAAGTCGGCTTCAATACCCATACTTTTCTGGGTAATCGCTGCCTCGATCTATTTGGAGAGCTCGAAAGGGCGCGTGATGTGTTCGACGAAATGCCCAAACGAGATGTTGTTAGTTGGAACACAATGATTTCGGGATATGTTTCATTTGGGTTATTTGATGATGCGTTCAGATTTTTCTCAGAAATGCAAAAGGCTGGCATAAGGCCTAGTGGGTTCACATATTCGACCCTCATTGTTCTGAGTGCTGTTTCCATTCTCCTTCCAGTGGATCAGGGGAGTCAAATCCATTCTTTGGTTGTCAAATCTGGTTTGGAGTCAGATGTGATTGTTGCAAGTTCACTTGTGGAAATGTATGCTAAATTTGGGTTAATTGACTCTGCCATGAAAACCTTTGCCAAGATTGGTGCCAGAGATTTGATATCTTGGAATACCATGATTATGGGCTTAGCTTATAATGGGAGAGTGAGTAAAGCCCTAGAAATTTTTAAAGAACTTCTCATAGGAGGTCCACCACCTGATGAAATTACCCTAGCTGGGGTTTTATTAGCTTGCAATGTCGGGGGTCTTGTTGATGAAGGGCTGAGTATATTCTCCTCAATGGAAAAGGAATATGGAGTCATACCAGCAATTGAGCATTATGCTTGCATTGTGGACATGATGAGTCGAGGTGGTAAACTTAAAGAAGCAATGGATATTGTAGAATTAATGCCTCATGAACCCAGTGGTTTGATTTGGGGATCACTACTTTGTGCTTGTGAAATTTATGGAGACTTGAGATTCACTGAGAGAGTTGCAGAGAGGGTTATGGAGTTGGAACCACAGTCGTCTTTACCTTATTTGGTTTTAGCTCAGGCATATGAGATGAGGGGCAGATGGGAGAGCCTGGTTAGAGTCAGGAGGGCTATGAAAGAGAAAGGTGTTAGGAAGGTGATTGGATGCAGTTGGATTGGGATAAAAAACCATGTTTTTGTTTTTAAGGAAAATCAATTATTGCACATCGGAGGCAAAGACATCTATTTTATTCTGAGATTACTGATTCAGGAGATCGAGGATGACGGGTATGCCTCTCAACAGTATGATAAAGTGAGGGCTGTGGGAGAGATAAAACAAAATAACCAATTCGGTAAAATAAAGCTTTCACGGGTGAACATTTACTCTTTCAATATCTATTTCAATTGTAAGGTTAGCCCACGATCTTTCAGAACAAATGAATTGATACCTGGTTTAAACAGAGTGGGTGGAGTAATGAATATCAAGACTTCCCATGATGCGGATGTTTTATCTAGAGAAGTGCTAACAACTGGTTTGATGTTGACACTCACTAAGCATTAG 1461 40.86 MQPFLKKAHGPLATSLSYYSNLIEHCFLLKSLDYAKFVHAQLIKVGFNTHTFLGNRCLDLFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELMPHEPSGLIWGSLLCACEIYGDLRFTERVAERVMELEPQSSLPYLVLAQAYEMRGRWESLVRVRRAMKEKGVRKVIGCSWIGIKNHVFVFKENQLLHIGGKDIYFILRLLIQEIEDDGYASQQYDKVRAVGEIKQNNQFGKIKLSRVNIYSFNIYFNCKVSPRSFRTNELIPGLNRVGGVMNIKTSHDADVLSREVLTTGLMLTLTKH* 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12985918 12989790 + Vvi18g1173 Vvi18g1173 780876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1173 486 PANTHER OS03G0435200 PROTEIN 121 400 - -
Vvi18g1173 486 PANTHER OS03G0435200 PROTEIN 1 63 - -
Vvi18g1173 486 PANTHER OS03G0435200 PROTEIN 64 121 - -
Vvi18g1173 486 PANTHER OS07G0578800 PROTEIN-RELATED 121 400 IPR045215 GO:0003723|GO:0009451
Vvi18g1173 486 PANTHER OS07G0578800 PROTEIN-RELATED 1 63 IPR045215 GO:0003723|GO:0009451
Vvi18g1173 486 PANTHER OS07G0578800 PROTEIN-RELATED 64 121 IPR045215 GO:0003723|GO:0009451
Vvi18g1173 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Vvi18g1173 486 Pfam PPR repeat family 77 121 IPR002885 -
Vvi18g1173 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Vvi18g1173 486 Pfam E motif 298 359 IPR046848 -
Vvi18g1173 486 Gene3D Tetratricopeptide repeat domain 132 228 IPR011990 GO:0005515
Vvi18g1173 486 Gene3D Tetratricopeptide repeat domain 4 127 IPR011990 GO:0005515
Vvi18g1173 486 Gene3D Tetratricopeptide repeat domain 229 357 IPR011990 GO:0005515
Vvi18g1173 486 Pfam PPR repeat 183 208 IPR002885 -
Vvi18g1173 486 TIGRFAM PPR: pentatricopeptide repeat domain 80 113 IPR002885 -
Vvi18g1173 486 TIGRFAM PPR: pentatricopeptide repeat domain 183 216 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1173 - - - vvi:100242007 618.231
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1173 . . . . . . . . Cmo04g02524 . . . . . . . . Bhi04g01837 . . . Hepe02g2102 . Lcy10g1297 . . . . . . . . . . Cone20ag0413 . . . . . . . . . . Bma01g00880 . . . . . . Car04g02324 . . . . . . . . . . . . . . . . . Lsi08g00508 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011857 1 2 0 0 1 1 1 1 1 1 1 1 1 0 1 1 2 0 1 1 1 1 1 1 1 1 2 1 1 1 29