Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1175 ATGGATAGTCCTAGTTTGCCGTCCCGTGTGCTCATTGCGTACGATGCGACAAAGGATTTGGGTAACGATGAGATTCAGGTCACCATAAAAGAAGTGCGAATGAGGGGTGACATTCTTCGTCGAGGCGACACGCTGGTTGTTTTTGGGGTTTTGCATAAAATCCAACATCCCATGGGTTACCACACCTTAGCACTTGCTCCTGTGTCAAGCAATCGAGCAATGGTAGAAGAAGTCTCAAAGAAAGTACATATGTATGTGAACAAGCTTCTGCCAAGTGCTCAAGAGTGTGAAGATGAAGGGGTGGACATTGAAGTTAAAGTTACTGCTGGAACTCCAATCAAGCAGGTTATTTTACAAGAGATTGTAGCTTATAAAACAACTTGGGTTATATTTGATAGGCACCTTAGACGGGATTTGAGGAACTACATTAACCAGATACCAAGCAAGGTTGCATTAATTCAAGATAACTTGTCGGTTAAGGTTCTAAGGTCTCAAACTACAAGTGGAACAGAAGTTATTGAAAATAAGTTGTTTTATTCTTTGAGTAAGCTTGTAGAGCAGTCTAATATCTCTTCCAGCAGCTTTCCAACACCAGCCAATTCCTCAGAAAGTTCCAATGTTGTTAAGAGCAACTTGATGTCTTCATTCATATACAGGTCACAGGAGCATAACTCTTCATTCTATGATGACTTTGGATCTTCCTCTAAGCAAGAAAAATCAGGTATATGCACTGTAGGTGAAAAGCAATATTCTGCAGATTCTGAGGTAATCCAGAAACAATTTAAGAGCATCTTCCGAAAGAGATCCTCAGAAGCACCTGTTCTTTGTGCTGCTTGTGGGATGAAGACGATATTATATATCAAGGAGTCCATGAAATTCAGTTTTTCTGAACTACAACTTGCAACAGATGATTTTTCAAAGGAGAACTTGTTAGGAGAAGGTGGATATGGTCACGTATATAAAGGTGAGCTTAAAGACGGACAGATTATTGCAGCAAAGGTACGAAAAGAAGCAAGTATGCAAGGATTTGCTGAATTCCATTCTGAAGTCTTTGTTTTGAGTTTTGCGCGCCACAAGAACATTGTGATGCTCTTGGGTTATTGTTGCAAGGAGAACTTTAATATCTTGGTGTATGAGTATATCTGCAACAAGTCTCTTGAATGGCACTTATTTGATAAAACTGCCACTGTTCTTGAGTGGCACCAAAGACGTGCTATTGCGATAGGAACTGCAAAAGGATTGCGCTTCCTACATAAAGAGTGTCGTGGAGGTCCTATAATTCATCGGGACATGCGGCCCAGCAATATCTTGCTAACACATGACTTTGTTCCTATGCTAGGTGACTTTGGCCTTGCCAAATGGAGAACAAATGATGACCCTGTTCACACAAGGGTACTTGGCACATTTGGATACCTTGCACCAGAGTATGCAGAGAATGGTATGGTTTCTGTGCGAACAGATGTCTATGCATTTGGCATGGTCCTTTTACAACTGATATCAGGGCGCAAGGTGATTGATCCAACAAGAGAAGGGCATCAACAATCTCTAAGACAGTGGGCAGAACCACTTATTGTGCGGCTTGCGTTACATGAACTTATTGATCCTCGTATTGAAGATTCGTATGACACGTATGAATTGTACCTCATGGCTAGAGCTGCATACTTATGTGTGCAAAGCAGCCCTGAAATGCGGCCCTCAATGGGGGAGGTCACACGCCTTCTTGAAGGGGAAAATGAGCATTTACACCACTTAGGGGAGCAATTTATTCCTCATTATACAAAGTTATGA 1788 41.61 MDSPSLPSRVLIAYDATKDLGNDEIQVTIKEVRMRGDILRRGDTLVVFGVLHKIQHPMGYHTLALAPVSSNRAMVEEVSKKVHMYVNKLLPSAQECEDEGVDIEVKVTAGTPIKQVILQEIVAYKTTWVIFDRHLRRDLRNYINQIPSKVALIQDNLSVKVLRSQTTSGTEVIENKLFYSLSKLVEQSNISSSSFPTPANSSESSNVVKSNLMSSFIYRSQEHNSSFYDDFGSSSKQEKSGICTVGEKQYSADSEVIQKQFKSIFRKRSSEAPVLCAACGMKTILYIKESMKFSFSELQLATDDFSKENLLGEGGYGHVYKGELKDGQIIAAKVRKEASMQGFAEFHSEVFVLSFARHKNIVMLLGYCCKENFNILVYEYICNKSLEWHLFDKTATVLEWHQRRAIAIGTAKGLRFLHKECRGGPIIHRDMRPSNILLTHDFVPMLGDFGLAKWRTNDDPVHTRVLGTFGYLAPEYAENGMVSVRTDVYAFGMVLLQLISGRKVIDPTREGHQQSLRQWAEPLIVRLALHELIDPRIEDSYDTYELYLMARAAYLCVQSSPEMRPSMGEVTRLLEGENEHLHHLGEQFIPHYTKL* 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 12997416 13013502 + Vvi18g1175 Vvi18g1175 780878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1175 595 Pfam Protein kinase domain 306 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1175 595 PANTHER RECEPTOR-LIKE KINASE 8 587 - -
Vvi18g1175 595 ProSitePatterns Tyrosine protein kinases specific active-site signature. 426 438 IPR008266 GO:0004672|GO:0006468
Vvi18g1175 595 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Vvi18g1175 595 Gene3D Phosphorylase Kinase; domain 1 274 380 - -
Vvi18g1175 595 Gene3D Transferase(Phosphotransferase) domain 1 382 587 - -
Vvi18g1175 595 ProSiteProfiles Protein kinase domain profile. 305 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1175 595 PANTHER OS01G0253100 PROTEIN 8 587 IPR045271 GO:0004714|GO:0006468
Vvi18g1175 595 SUPERFAMILY Protein kinase-like (PK-like) 289 576 IPR011009 -
Vvi18g1175 595 CDD STKc_IRAK 311 576 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1175 - - - vvi:100247151 1167.91
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1175 . . . . . . . . Cmo04g02526 . . . Car01g01585 . . . . . . . . . . . Cla08g00648 . . . . . . Cone4ag1445 Cone7ag1489 . . Lsi04g01809 . . Cme03g00434 . . . Bda01g01381 Bpe02g01594 . . . . . . . . . . Cpe01g02090 . . . . . . . . . . . . . . . . . Chy03g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011525 0 0 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 2 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76339 PF00069 Pkinase 9.20E-38 CL0016 Vvi PK