Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1176 ATGGAGGGAAGAGAAGAGAAATCTATATTGACTGGAGAAGCTGTGAGCTGCAATCCAATGGCTAAAGTTTGTTGGCCTTACTTTGATCCTGAGTATGAGAACTTGAGCATGAGAATAAATCCTCCAAGGGTGTCTGTAGACAATTTAAGTTGCAGCGACTGTACTCTGATCAAGGTTGACAGCATGAACAAACCAGGAATACTGCTGGAAGTGGTACAAATCCTAACAGACATTGACCTCCTAATTACCAAAGCTTACATCTCTTCTGATGGCGGATGGTTCATGGATGTGTTTCATGTCACCGATCAACAAGGAAACAAAATTACAGATGGAAAAATCATCGACTACATTGAGAAGGCTTTAGGACCAAAGGGAGACACCATAGATGGGGTCAAGACTTGGCCAGGAAAACGAGTTGGGGTGCACTCTGTTGGTGATCACACAGCCATTGAGCTCATTGGCAAGGACCGCCCAGGCCTCTTATCAGAAATCTCTGCTGTTTTAGCTGACCTCCACTTTAATGTGGTAGGTGCTGAAGTTTGGACACACAACAGACGAATCGCATGTGTTGTCTATGTCAATGATGATGCCACATGCCGTGCTGTGGATGACCCAACTCGATTATCTGTTATGGAGGAGCAACTCAAGAATGTGTTACGTGGATGCGAGGATGATGACAAAGTGGCTCGAACCAGTTTCTCCATGGGGTTCACTCATGTTGATCGGAGGCTTCACCAGATGTTGTTTGCAGACAGGGATTATGAAGGTGGTGGAACAACAATTGAAGCTGATTATCCTCCCTCCTTCAAACCAAAAATCACAATTGACCGTTGTGAGGATAAGGGATACTCAGCGGTTAGTGTCATGTGTAAAGATCGGCCAAAACTGATGTTTGACATTGTGTGCACACTCACAGATATGCAATATGTTGTTTTCCATGCCAGCATTTCATCCGATGGTCCCTATGCATCACAGGAGTATTTTATTCGTCACATGGATGGTTGCACACTTGATAATGAAGGAGAGAAGGAAAGGGTCATCAAATGTCTTGAAGCTGCAATTCGACGAAGAGTAAGCGAGGGTTTAAGCCTGGAGCTCTGTGCAAAGGATAGAGTAGGCTTGTTATCCGAAGTGACAAGGGTTCTCCGAGAACATGGGTTGTCAGTTACCAGAGCGGGCGTCTCAACAGTTGGAGAGCAAGCAATGAATGTTTTCTACGTGAGAGATGCTTCTGGAAAACCAGTGGACATGAAGACCATAGAAGCGCTTCGTAAAGAGATCGGACACACTATGATGCTTAACGTGAAGAAGGAACCATCCAGTGCTAAGACACCTGAGGCTAGCGGATGGGCCAAGACGAGCTTCTTCTTCGGAAGCCTGTTCGAAAGGTTCTTGACTTGA 1401 45.4 MEGREEKSILTGEAVSCNPMAKVCWPYFDPEYENLSMRINPPRVSVDNLSCSDCTLIKVDSMNKPGILLEVVQILTDIDLLITKAYISSDGGWFMDVFHVTDQQGNKITDGKIIDYIEKALGPKGDTIDGVKTWPGKRVGVHSVGDHTAIELIGKDRPGLLSEISAVLADLHFNVVGAEVWTHNRRIACVVYVNDDATCRAVDDPTRLSVMEEQLKNVLRGCEDDDKVARTSFSMGFTHVDRRLHQMLFADRDYEGGGTTIEADYPPSFKPKITIDRCEDKGYSAVSVMCKDRPKLMFDIVCTLTDMQYVVFHASISSDGPYASQEYFIRHMDGCTLDNEGEKERVIKCLEAAIRRRVSEGLSLELCAKDRVGLLSEVTRVLREHGLSVTRAGVSTVGEQAMNVFYVRDASGKPVDMKTIEALRKEIGHTMMLNVKKEPSSAKTPEASGWAKTSFFFGSLFERFLT* 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13029893 13036147 + Vvi18g1176 Vvi18g1176 780879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1176 466 ProSiteProfiles ACT domain profile. 149 233 IPR002912 -
Vvi18g1176 466 Gene3D - 147 227 - -
Vvi18g1176 466 CDD ACT_ACR_4 361 432 - -
Vvi18g1176 466 Pfam ACT domain 364 423 IPR002912 -
Vvi18g1176 466 Pfam ACT domain 149 219 IPR002912 -
Vvi18g1176 466 Gene3D - 358 441 - -
Vvi18g1176 466 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 23 466 IPR040217 -
Vvi18g1176 466 SUPERFAMILY ACT-like 144 220 IPR045865 -
Vvi18g1176 466 SUPERFAMILY ACT-like 51 128 IPR045865 -
Vvi18g1176 466 CDD ACT_ACR_1 54 125 - -
Vvi18g1176 466 ProSiteProfiles ACT domain profile. 363 440 IPR002912 -
Vvi18g1176 466 ProSiteProfiles ACT domain profile. 56 131 IPR002912 -
Vvi18g1176 466 CDD ACT_ACR_3 283 357 - -
Vvi18g1176 466 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR3 23 466 - -
Vvi18g1176 466 CDD ACT_ACR_2 148 221 - -
Vvi18g1176 466 SUPERFAMILY ACT-like 359 428 IPR045865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1176 - - - vri:117906999 939.873
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1176 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0807 Cone20ag0412 . Csa03g04320 Chy04g00380 . Blo17g00230 . . Bda13g01544 . Bpe14g00321 . Bma02g00288 . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016218 2 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 8