Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1177 ATGTGGGGTACCGCACTACGCATGCAGTTAAAGTCGCAAATTTCATCCCCGTACGCTTCCTCTGCCCTTCGCCTCGGTCCTATATACATCGTCATCATCATCACCTTCATCGGCAGCTGCTTAGCAGAAGACTCACGGCTCTGCTTCTTGAAGGACAATTTAGTGTTTGGGACGATGGAAATGGTGGGACAAGGAGGTGAGGAGCTGGAGTTCTGCTTTGAGAGGCTTGTGATGGGTGGGGACGGAAGAGGGGGGATGGACGGAGGCGGTGTTGGGGTCATTACTGAGTGGAAGGATGTCCCTATGGAGCTTCTGCTGCGGATTGTTGCGCTCGTCGATGATCGGACAGTGATTATGGCTTCTGGGGTGTGCAGTGGATGGAGAGATGCTATTTGCTTGGGCCTTACCCATCTCTCCCTTTCTTGGTGCAAAAACAACATGAACAACTTGGTTCTATCGCTTGCTCCCAAATTCACAAAATTGCAGGCTCTAACACTGCGTCAAGATAAACCACAGCTGGAGGATAAAGCTGTGGAGATTATTGCAAATTATTGCCATGATCTGCAGGATTTGGATCTCAGTAAAAGCTTCAAGCTTAGTGATTCCTCCCTTTATGCCTTGGCTCATGGTTGTCCTAATCTTACTAAACTTAACATCAGTGGATGTACGGCATTCAGTGATGCTGCTCTTGCACATCTGACCAGTTTCTGCAGAAGATTAAAAATTTTAAATCTTTGTGGATGTGGGAAAGCTGCATCTAATAGGGCATTGCAGGCTATTGGACGGAACTGCAGTCAGCTGCAATCTTTGAATCTGGGGTGGTGTGAGGATGTGAGTGATGCTGGAGTGATGAGTTTAGCATATGGATGCCCTGATCTCAGGGCGCTTGACTTGTGTGGTTGTGTTCATATTACAGATGAGAGCGTAATTGCTTTGGCAAACAGGTGCCTTCATCTGAGATCCCTTGGCCTGTACTTCTGTCAGAACATTACAGACAAAGCAATGTATTCCCTGGCCCAGAGCCGTGTAAAGAACAAGCATGAAATGTGGGAATCCATGAAGAGCAGGTACAGCGAGGAAGGGCTTATGAATCTCAATATCAGCCAGTGCACAGCCCTCACACCTCCTGCTGTTCAAGCTGTATGTGATTCATTTCCTGCACTTCACACTTGTCCAGGAAGGCATTCGCTAATCATAAGTGGCTGTTTGAGCTTAACATCGGTGCATTGTGCCTGTGGTGTCCAAGCACACCGCACAGCCAGCCAGCTTTCACACCCAGCTCATTAA 1287 48.02 MWGTALRMQLKSQISSPYASSALRLGPIYIVIIITFIGSCLAEDSRLCFLKDNLVFGTMEMVGQGGEELEFCFERLVMGGDGRGGMDGGGVGVITEWKDVPMELLLRIVALVDDRTVIMASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKFTKLQALTLRQDKPQLEDKAVEIIANYCHDLQDLDLSKSFKLSDSSLYALAHGCPNLTKLNISGCTAFSDAALAHLTSFCRRLKILNLCGCGKAASNRALQAIGRNCSQLQSLNLGWCEDVSDAGVMSLAYGCPDLRALDLCGCVHITDESVIALANRCLHLRSLGLYFCQNITDKAMYSLAQSRVKNKHEMWESMKSRYSEEGLMNLNISQCTALTPPAVQAVCDSFPALHTCPGRHSLIISGCLSLTSVHCACGVQAHRTASQLSHPAH* 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13037310 13042345 + Vvi18g1177 Vvi18g1177 780880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1177 428 SUPERFAMILY F-box domain 97 138 IPR036047 GO:0005515
Vvi18g1177 428 PANTHER UNCHARACTERIZED 61 410 - -
Vvi18g1177 428 SUPERFAMILY RNI-like 131 388 - -
Vvi18g1177 428 SMART LRR_CC_2 211 236 IPR006553 -
Vvi18g1177 428 SMART LRR_CC_2 185 210 IPR006553 -
Vvi18g1177 428 SMART LRR_CC_2 158 184 IPR006553 -
Vvi18g1177 428 SMART LRR_CC_2 264 289 IPR006553 -
Vvi18g1177 428 SMART LRR_CC_2 290 315 IPR006553 -
Vvi18g1177 428 SMART LRR_CC_2 237 263 IPR006553 -
Vvi18g1177 428 SMART LRR_CC_2 132 157 IPR006553 -
Vvi18g1177 428 SMART LRR_CC_2 359 384 IPR006553 -
Vvi18g1177 428 SMART LRR_CC_2 316 341 IPR006553 -
Vvi18g1177 428 Gene3D Ribonuclease Inhibitor 132 425 IPR032675 -
Vvi18g1177 428 Pfam F-box domain 97 132 IPR001810 GO:0005515
Vvi18g1177 428 Pfam Leucine Rich repeat 290 313 IPR001611 GO:0005515
Vvi18g1177 428 Pfam Leucine Rich repeat 211 230 IPR001611 GO:0005515
Vvi18g1177 428 Pfam Leucine Rich repeat 264 287 IPR001611 GO:0005515
Vvi18g1177 428 Pfam Leucine Rich repeat 316 339 IPR001611 GO:0005515
Vvi18g1177 428 Gene3D - 96 131 - -
Vvi18g1177 428 PANTHER F-BOX PROTEIN SKP2B-LIKE ISOFORM X1 61 410 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1177 K03875 SKP2, FBXL1; F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2) - vvi:100255759 726.472
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1177 . Blo12g01113 . Bda03g00025 . Bpe04g00016 Bma04g00023 . Cmo04g02528 Cmo15g00645 . . . . . . Cpe13g00654 Bhi04g01835 Tan11g1207 . . Hepe02g2748 . Lcy10g1301 Cla08g00651 Cam08g1078 Cec08g0664 Cco08g0775 Clacu08g0782 . Cre08g0589 . Cone7ag1488 Cone17ag0806 Cone20ag0411 . . . Cme03g00431 Blo17g00229 Blo18g00227 . Bda13g01543 Bpe02g01595 Bpe14g00322 Bma01g00879 Bma02g00287 . . . . . Car04g02327 Car15g00586 . . . . . . . . . . . . . . . . Lsi08g00510 . Chy03g00570 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004343 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 43