Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1179 ATGGCGGTGTTGAATCTTCACGTGAGCTCCAAAGCGGAGTTGAAGCGAAGGGAGAAGCAGAAGAAGAAAGCTAGGTCAGGGGGATTCGAGTCTCTAGGGCTGAGTCCCAATGTCTACAGGGCCATCAAGCGCAAGGGCTACCGAGTCCCCACTCCCATTCAGCGCAAGACCATGCCCCTCATTCTCTCTGGCTGCGACGTTGTTGCCATGGCCCGTACTGGTTCCGGAAAAACCGCCGCCTTCCTCATTCCGATGCTTGAGCGCTTGAAGCAACACGTCCCTCAGACCGGCGTTAGGGCTCTCATTCTCTCTCCTACTAGGGACCTGGCGCTTCAGACTTTGAAGTTCACCAAGGAACTCGCTCGATACACCGATGTTCGCATTAGTTTACTTGTTGGTGGTGATAGTATGGAAAGCCAGTTTGAAGAATTGGCACAGAATCCCGATATTATAATTGCAACTCCTGGTAGGCTCATGCACCATTTGTCTGAGGTTGATGACATGTCATTGCGCACAGTGGAATACGTGGTGTTTGATGAAGCTGATTGTCTATTTGGCATGGGTTTTGCTGAGCAGTTGCATAAAATCCTTGCCCAGCTGAGTGATAATCGTCAGACCTTGCTTTTTAGTGCTACCTTACCAAGTGCTCTTGCAGAATTTGCCAAGGCTGGTCTACAGGACCCTCAACTTGTGCGTCTTGATTTGGATACTAAGATTAGCCCTGACTTGAAGGTTAACTTTTTCACCTTACGACACGAAGAAAAACTTGCTGCCTTGCTGTATTTGATAAGGGAACAAATCAGTTCTGATCAGCAGACATTAATATTTGTTTCCACAAAGCATCATGTGGAGTTCCTTAATGTCCTTTTTAGAGAAGAGGGCATTGAGGCTTCTGTATGTTATGGTGATATGGACCAAGATGCTCGCAAGATTCATATATCAAGGTTTAGATCAAGAAAGACCATGTTGCTAATTGTGACAGATGTTGCAGCTAGGGGCATTGACATCCCATTGCTCGATAATGTTGTTAATTGGGACTTTCCACCAAAACCTAAAATTTTTGTCCATCGAGTAGGGCGAGCTGCAAGGGCTGGTCGGACTGGTACTGCATTTTCTTTTGTGACATCTGAGGATATGCCTTACCTTTTAGATCTTCATCTCTTCCTCTCAAAACCTATTAGAGCTGCTCCCACTGAGGAGGAGGTTTTGCAAGATCCAGATGAAGTAATGTCCAAAATTGATCAAATAGTTGCAAATGGAGGAACTGTTTATGGGCGGCTCCCCCAGACAGTTATAGATCTTGTTTCAGACAGGGTTCGGGAACTTGTTGATTCATCTGCTGAACTGGCTTCTTTGCAGAAAACCTGTACAAATGCATTTCGCTTGTATTCAAAGACAAAACCTTCACCTTCTAGGGAGTCCATTAGAAGAGCAAAAGATCTACCCCGTGAAGGGTTGCATCCAATTTTCAAAAATGTACTAGGAGGTGGTGAATTAATGGCACTGGCTTTTTCTGAGCGCTTGAAAGCTTTCAGACCAAAGCAAACCATTTTGGAAGCTGAAGGTGAAGCTGCTAAATCAAAGAATTTCCAAGGTCCTGCTGTTGATGTGATGAAAAAGAAGAGGGCTATTCATGAAAAGGTCATTAATTTGGTACAACAGCAACGCTCTAGTGATCATGTGGCAAAGATGCAGGAAGTCGAACCTGAAATGGCTTATCCAAAGGATAAGGAGAAAAAAGGAGGCTCAAGTTCTAAAAGAAAGGCAAAGACCTTCAAGGATGAGGAGTACTTTATAAGTTCAGTGCCAACGAATCGCCATGCAGAGGCAGGACTCTCAGTAAGAGCTAATGAAGGTTTTGGGTCGAGCAGATTGGAAGCTGCTGTTCTGGATCTAGTTGCAGATGATAGTTCGGGTTTGCAGAAGCAGAAGTCTGTATATCATTGGGATAAGAGAGGTAAAAAATACATCAAGTTAAACAATGGTGAACGTGTGACAGCCAGTGGAAAGATAAAGACCGAAAGTGGCTCAAAAGTAAAAGCCACCAAAACAGGGATATACAAGAAGTGGAAAGAACGATCACACAATAAGATATCTCTAAAAGGAACAAGTAATGAAGGAAATGCTGAAGCCACAAGTTCAGCAGGAAATCACCAATTGCATGGAGGTAACTGGAAGTTGAGAGGAAGAAAGAACCACCGGTCCATGCCCAATGCTCATGTGCGCTCAGAAATCAAGGACTCTGAGCAGGTTCGGAAGGACAGGCAGAAAAAGGCAAATAGAATTTCCCACATGAAGAGCAAACCAATGAAGGGTAATAAAAAGTTTGGTAAAAATGGAAAAAGAGGAAAATCAAAGTAA 2361 44.13 MAVLNLHVSSKAELKRREKQKKKARSGGFESLGLSPNVYRAIKRKGYRVPTPIQRKTMPLILSGCDVVAMARTGSGKTAAFLIPMLERLKQHVPQTGVRALILSPTRDLALQTLKFTKELARYTDVRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGMGFAEQLHKILAQLSDNRQTLLFSATLPSALAEFAKAGLQDPQLVRLDLDTKISPDLKVNFFTLRHEEKLAALLYLIREQISSDQQTLIFVSTKHHVEFLNVLFREEGIEASVCYGDMDQDARKIHISRFRSRKTMLLIVTDVAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMPYLLDLHLFLSKPIRAAPTEEEVLQDPDEVMSKIDQIVANGGTVYGRLPQTVIDLVSDRVRELVDSSAELASLQKTCTNAFRLYSKTKPSPSRESIRRAKDLPREGLHPIFKNVLGGGELMALAFSERLKAFRPKQTILEAEGEAAKSKNFQGPAVDVMKKKRAIHEKVINLVQQQRSSDHVAKMQEVEPEMAYPKDKEKKGGSSSKRKAKTFKDEEYFISSVPTNRHAEAGLSVRANEGFGSSRLEAAVLDLVADDSSGLQKQKSVYHWDKRGKKYIKLNNGERVTASGKIKTESGSKVKATKTGIYKKWKERSHNKISLKGTSNEGNAEATSSAGNHQLHGGNWKLRGRKNHRSMPNAHVRSEIKDSEQVRKDRQKKANRISHMKSKPMKGNKKFGKNGKRGKSK* 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13055733 13072493 - Vvi18g1179 Vvi18g1179 780882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1179 786 CDD DEADc_DDX54 27 232 - -
Vvi18g1179 786 MobiDBLite consensus disorder prediction 757 786 - -
Vvi18g1179 786 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 58 231 IPR014001 -
Vvi18g1179 786 SMART ultradead3 46 246 IPR014001 -
Vvi18g1179 786 MobiDBLite consensus disorder prediction 737 756 - -
Vvi18g1179 786 SMART helicmild6 284 365 IPR001650 -
Vvi18g1179 786 CDD SF2_C_DEAD 250 374 - -
Vvi18g1179 786 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 5 782 - -
Vvi18g1179 786 SMART DBP10CT_2 631 693 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Vvi18g1179 786 MobiDBLite consensus disorder prediction 700 720 - -
Vvi18g1179 786 Pfam DBP10CT (NUC160) domain 631 692 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Vvi18g1179 786 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 27 55 IPR014014 GO:0003724
Vvi18g1179 786 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 255 404 IPR001650 -
Vvi18g1179 786 MobiDBLite consensus disorder prediction 697 786 - -
Vvi18g1179 786 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 5 782 - -
Vvi18g1179 786 Pfam Helicase conserved C-terminal domain 254 365 IPR001650 -
Vvi18g1179 786 Gene3D - 5 234 IPR027417 -
Vvi18g1179 786 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 383 IPR027417 -
Vvi18g1179 786 Gene3D - 246 466 IPR027417 -
Vvi18g1179 786 MobiDBLite consensus disorder prediction 1 29 - -
Vvi18g1179 786 Pfam DEAD/DEAH box helicase 51 218 IPR011545 GO:0003676|GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1179 K14808 DDX54, DBP10; ATP-dependent RNA helicase DDX54/DBP10 [EC:3.6.4.13] - vvi:100257398 1465.67
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1179 . . . . . . Bma04g00302 . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1487 . . . . . . Blo17g00228 . . Bda13g01542 . Bpe14g00323 . Bma02g00286 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009899 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 33