Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1180 ATGATTCTCTCTAGAGATCCCGCCGCCATCTTCAGCGGCGGCGGTATCAGCTTTCTCACTGGTGATCGAAATGCAAGATTCAGCTATGGGTATTCCAGTTTCAAGGGTAAAAGGCCTTCCATGGAGGATTTCTACGAGACTAGAATATCAGAGGTTGATGGTCATATGGTAGCCTTCTTTGGTGTTTTTGATGGTCATGGAGGTTCAAGAACCGCGGAATACCTCAAAAACAATCTTTTCAAGAATTTAAGTAGCCACCCAGATTTCATCAAAGATACAAAGTCAGCCATTGCTGAAGTATTTAGAAAGACTGATGCTGATTATCTCAATGAAGAGAAAGGTCAGGCAAGAGATGCTGGCTCAACTGCCTCAACTGCTGTGCTCGTTGGTGACCGGCTGCTTGTTGCAAATGTGGGAGATTCTAGAGTGGTTGCTTGTAGAGCTGGTTCAGCTATCCCACTGTCCACTGATCACAAACCTGATAGATCTGATGAACGCCAAAGGATTGAAGATGCTGGAGGTTTCGTTATTTGGGCAGGAACCTGGCGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGGGATAAACTTCTTAAGGCATATGTTGTTGCTGATCCAGAAATTCAGGAAGAAGAAATTGATGGTGTAGATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGAAAACTTATACATGAGGCTTATGCACGAGGGAGCTCTGACAACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGA 831 43.92 MILSRDPAAIFSGGGISFLTGDRNARFSYGYSSFKGKRPSMEDFYETRISEVDGHMVAFFGVFDGHGGSRTAEYLKNNLFKNLSSHPDFIKDTKSAIAEVFRKTDADYLNEEKGQARDAGSTASTAVLVGDRLLVANVGDSRVVACRAGSAIPLSTDHKPDRSDERQRIEDAGGFVIWAGTWRVGGVLAVSRAFGDKLLKAYVVADPEIQEEEIDGVDFIIIASDGLWNVLSNKEAVAIVQDIMDAEAASRKLIHEAYARGSSDNITCVVVRFKNS* 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13073664 13087048 - Vvi18g1180 Vvi18g1180 780883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1180 276 SUPERFAMILY PP2C-like 22 275 IPR036457 -
Vvi18g1180 276 SMART PP2C_SIG_2 47 273 IPR001932 -
Vvi18g1180 276 PANTHER PROTEIN PHOSPHATASE 2C 11-RELATED 4 276 - -
Vvi18g1180 276 CDD PP2Cc 27 273 IPR001932 -
Vvi18g1180 276 Pfam Protein phosphatase 2C 31 266 IPR001932 -
Vvi18g1180 276 ProSitePatterns PPM-type phosphatase domain signature. 59 67 IPR000222 GO:0043169
Vvi18g1180 276 PANTHER ALPHABET, ISOFORM E-RELATED 4 276 - -
Vvi18g1180 276 Gene3D - 20 276 IPR036457 -
Vvi18g1180 276 ProSiteProfiles PPM-type phosphatase domain profile. 28 273 IPR001932 -
Vvi18g1180 276 SMART PP2C_4 18 271 IPR001932 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1180 K17506 - vvi:100260831 547.354