Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1182 ATGGCAAACCCTACTTATCTTTTTATGTCTCCCACCCCATTCTTTCCATATGAAAAGGGGTTCCACTATCAACCTATGTTAAACTTTCTTTGGTACCCCAACTCAAAATTGATTGTGCATTTCTTGTGTTTACAAGATCTTTATCAAGTGTTGATATCAAATTCCTTGTGCTTTCTTCTTCCTTCGGCGACCTCTCTCTTTCTCTCACCTCTGTTTCTCCCGCTAGATCTGAACTATCACCATCGCCTCCATTTCCTGAATCTACAGTGGCCAAATAGTGTTCGTAAAATGTTGCCGGATTCATCTTCAAGCCAGCCAGAGTTTGATTACTTGTTCAAGTTGCTGTTGATTGGGGATTCAGGTGTTGGGAAGAGTACCCTTCTCTTGAGTTTCACCTCCAATACCTTTGAAGATCTTTCTCCCACAATTGGTGTGGATTTTAAGGTGAAACATGTTAATATTGGGGGGAAGAAGTTGAAGCTTGCAATTTGGGACACAGCTGGACAGGAGAGATTTAGAACACTTACTAGTTCATACTACAGAGGAGCTCAGGGCGTAATAATGGTGTATGATGTAACACGGCGTGAAACATTTACAAATCTATCTGACATATGGGCTAAAGAAATTGACCTGTACTCAACAAATCAAGATTGCATCAAGATGCTCGTTGGCAACAAAGTTGATAAGGAAAGTGAGAGGGTTGTCACCAAAAAAGAGGGAATCGACTTTGCTAGAGAATATGGATGCCTTTTTCTCGAATGCAGTGCAAAAACTCGGGTAAATGTAGAGCAATGCTTTGAGGAGCTTGTTTTGAAGATTTTGGAAACACCAAGTCTTCTGGCTGAGGGTTCAAGTGGCGTAAGAAAGAACATCTTTAAGCAGAAACCTCCGGAATCTGATGCGTCAACCAGTGGGTGTTGCTGA 924 41.56 MANPTYLFMSPTPFFPYEKGFHYQPMLNFLWYPNSKLIVHFLCLQDLYQVLISNSLCFLLPSATSLFLSPLFLPLDLNYHHRLHFLNLQWPNSVRKMLPDSSSSQPEFDYLFKLLLIGDSGVGKSTLLLSFTSNTFEDLSPTIGVDFKVKHVNIGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGVIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVTKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLLAEGSSGVRKNIFKQKPPESDASTSGCC* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13133828 13157022 - Vvi18g1182 Vvi18g1182 780885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1182 307 Gene3D - 105 307 IPR027417 -
Vvi18g1182 307 CDD Rab18 112 273 - -
Vvi18g1182 307 SMART ran_sub_2 117 302 - -
Vvi18g1182 307 PANTHER BNAA05G18680D PROTEIN 103 307 - -
Vvi18g1182 307 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 280 IPR027417 -
Vvi18g1182 307 SMART rab_sub_5 112 276 - -
Vvi18g1182 307 PANTHER LD21953P-RELATED 103 307 - -
Vvi18g1182 307 ProSiteProfiles small GTPase Ras family profile. 104 307 IPR001806 GO:0003924|GO:0005525
Vvi18g1182 307 TIGRFAM small_GTP: small GTP-binding protein domain 110 268 IPR005225 GO:0005525
Vvi18g1182 307 Pfam Ras family 113 274 IPR001806 GO:0003924|GO:0005525
Vvi18g1182 307 ProSiteProfiles small GTPase Rho family profile. 105 274 - -
Vvi18g1182 307 SMART rho_sub_3 114 276 IPR001806 GO:0003924|GO:0005525
Vvi18g1182 307 SMART ras_sub_4 109 276 - -
Vvi18g1182 307 ProSiteProfiles small GTPase Rab1 family profile. 107 307 - -
Vvi18g1182 307 SMART arf_sub_2 101 277 - -
Vvi18g1182 307 PRINTS Transforming protein P21 ras signature 112 133 - -
Vvi18g1182 307 PRINTS Transforming protein P21 ras signature 134 150 - -
Vvi18g1182 307 PRINTS Transforming protein P21 ras signature 152 174 - -
Vvi18g1182 307 PRINTS Transforming protein P21 ras signature 216 229 - -
Vvi18g1182 307 PRINTS Transforming protein P21 ras signature 251 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1182 K07910 RAB18; Ras-related protein Rab-18 - vvi:100266035 423.32
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1182 . . . . . . . . . . Cma01g01016 . Car01g00897 . . . . Bhi04g02196 . . . . . . . . . . . . . . . Cone17ag0804 Cone20ag0409 . . . . . . . . . . . . . Cmo01g01058 . . . . . . Cpe02g00861 . . . . . . . . . . . . . . . . Chy03g00809 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000246 3 6 3 2 3 5 8 5 4 5 4 5 7 5 5 6 5 9 7 5 5 5 4 5 4 5 5 6 10 3 154