Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1195 ATGGAGATTGATGCTGATTGGGCTGATCCGATTGGGAATGAACTCCTCCATGACTCACCCAAGGAGTCTTCATCCTCAGATTCTAACCTAAGTAGCATCAGCAGCAACAAAGAAGTATCACTAATACCTACTCGGACCACCAAGCAGTTGCTTTTTGATTGTGCTGCTGCACTTGCAGAAGGAAACATTGATGGAGCATCAGCCATGATAAGTGAACTCCGGCAGAAAGTCTCAATCCAAGGAGATCCTCCACAGAGGATTGCAGCCTACATGGTGGAAGGTCTTGCAGCTCGCATGGCTTCCTCTGGAAAATGCCTCTATAAAGCTCTGAAATGCAAAGAGCCCCCATCTTTGGACCGGCTCTCAGCTATGCAGATCCTCTTTGAGGTATGCCCATGTTTTAGATTTGGACTTACAGCAGCTAATGGTGCAATCACAGAGACATTTAAAGATGAGAAGAGAGTTCATATAGTAGATTTTGAAATAAACCAAGGGATAAACTTTGCTTTCCAGCTGCACCACATGCCTGATGAGAGCGTCTCAACAGTAAACCAGCGAGATCAGCTTCTCCGGATGGTTAAGAGCTTGAACCCAAAACTTGTGACTATTGTTGAACAAGACATGCACACAAACACAGCCCCTTTTTTCCCGAGATTTGTCGAAGCCTACAACTACTACTCATCTATGTTCGACTCTCTTGATGCAACTCTCCCCAGGGGCAGCCAGGACAGAGTGAATGTTGAAAGACAGTGCCTGGCACGGGACATAGTTAACATTGTAGCATGTGAGGGTGAAGAAAGAGTAGAACGGTACGAGGCTGCAGGGAAATGGAGGGCAAGGATGATGATGGCTGGTTTCACTTCATGTCCAATGAGTCAGAATGTGAGTGATACAGTCCGGAAACTCATAAGGGAATACAGTGAAAGGTACACAGCAAAGGAGGAAATGGGTGCTCTCCATTTTGGGTGGGAAGATAAGAGCTTGATTTTTGCTTCAGCATGGAGGTGA 1008 46.03 MEIDADWADPIGNELLHDSPKESSSSDSNLSSISSNKEVSLIPTRTTKQLLFDCAAALAEGNIDGASAMISELRQKVSIQGDPPQRIAAYMVEGLAARMASSGKCLYKALKCKEPPSLDRLSAMQILFEVCPCFRFGLTAANGAITETFKDEKRVHIVDFEINQGINFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTIVEQDMHTNTAPFFPRFVEAYNYYSSMFDSLDATLPRGSQDRVNVERQCLARDIVNIVACEGEERVERYEAAGKWRARMMMAGFTSCPMSQNVSDTVRKLIREYSERYTAKEEMGALHFGWEDKSLIFASAWR* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13408108 13413196 + Vvi18g1195 Vvi18g1195 780898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1195 335 MobiDBLite consensus disorder prediction 1 32 - -
Vvi18g1195 335 Pfam GRAS domain family 166 335 IPR005202 -
Vvi18g1195 335 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 166 334 IPR005202 -
Vvi18g1195 335 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 165 IPR005202 -
Vvi18g1195 335 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 1 165 IPR030011 GO:0003700|GO:0005634
Vvi18g1195 335 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 166 334 IPR030011 GO:0003700|GO:0005634
Vvi18g1195 335 MobiDBLite consensus disorder prediction 18 32 - -
Vvi18g1195 335 ProSiteProfiles GRAS family profile. 38 335 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g1306 Vvi18g1195 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14273 PF03514 GRAS 4.40E-62 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1195 - - vvi:100253954 347.436