Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1196 ATGCGCTCTCCCAAACACAAAACTCAAAAACCCGTTTCCAAACCGGAGAGCGCCACCAATGCTACCGCCTCTTCCACTTTCTTTGATATCTACGGTCCAGAGGCTAAGGCTGAAGTTGTTTTCAAGACTCCCGATGCCGACTCAACGTTGAATCTGCAAGACGTTCAAGGACTTGTAACTTGGGTGCTTGCTGAAGGATTCATGCCATCGTGGATTTTTATTAAAAACAAACCCCTGATTCCAAAAGTGGTTATGCTCTATGTCCCAGGCCTTGATGCAGCTTTGTACATGTCACAATCTAAAATACTTAGTGGTTTGAAAGAATTCTGTGGCAATCCAAGGGCAGTTTTAGCTCTTAGCTGTGTATCAGATAGAATGCAGACGATTGATGCACTCCTGACATGCAAGCTCAAAAGAAAGAGAAATGAAGTTGATTCAGCATTGAAAAAACATGATCAGACATCTGAACAAGGGGGTTGTAGTGGTGGTTCAAATAATTCATCGTCCATGGAAGTTTTGAAAGATTTACCTTTCCCCATTACATATTACACACTCACAGCAAAGGAACTGGAAGATAATGGATATTGTCATGATCAACCAGGTTTTGTTTCGACTCTTCCTGCTCCTTCAGGATGTCGCCTCTATGAAATGTTGGCACTTGATTGCGAGATGTGTGTCACAAGCGAGGGGTTTGAGCTCACAAGAATTAGTCTGGTAGATATTAAAGGACAGGTCGTGTTAGATAAATTGGTTAAGCCATCAAATCGTATCATTGATTACAACACTAGGTATAGTGGAATCACCTGTGAGATGTTGAATGGGGTGACTACAGGTCTGAAGGATGTTCAGGAAGATTTTCTGAAGCTGGTTTACAAAGAGACCATCCTAGTCGGACATTCATTGGAGAATGATTTGTTAGCTTTGAAGATCTCTCATGATTTGGTGATTGATACTGCAGTATTATACAAGCACCCTCGTGGTGCATCTTATAAAACTGCTCTTCGAGTGCTCACTAGGAGATTTCTTTCTAGGGAGATACAGGAATCAAGAAATGGACATGACAGCATTGAAGATGCAAGAGCTGCTATGGAGCTGGCACTTGAGGTTGAGAAATATGGACCTGAATTTGGTTCACCTCCGTCATTTATGCGGAAGAAGCTCCTTACAGTTTTGAATGATTATGGCAAAACTTCCTCTTTCATTGATGATATTTCTATAGTTAGGCGATACACTTCTGAGGCATCCCATGCGTTTCCTGTGTCTTCTGATGTTGAAGCTCTTTCAAAGGCCAAAAAGGAGGTAAAGAATGATAAGGTACACTTTGTTTGGACTCAATTCTCAGAATTGAATTCCTATTTCAAGAAACAAGCAGAGGACACGGACAAGTTGAATGCAAAACTGGCAGAGATGATATCATTGCTTACTTGTAATAAGAAGTCTACCACACCAAAAGGCATCAAGTTTAGTGTGACTTCTGAATTGAAGGACATACTAACTTGCATTGACACTAGAATCCGAAGCCTCTACCATGAATTGCCTGCTAATACTATGCTTATAATTTGCACAGGTCATGGAGACACAGCCATTGTCCATAGATTGAGGAAAATGCTCAGAGAGCAGATTGAAACCACAGTAAGCCGTGAGAAACTTGTAAAAGTCTTGGAAGAGCTCCAGGCCCAGGCTGAGGTAGCTTTGTGTTTTGTGGGTGTGAAGCATTGA 1719 41.59 MRSPKHKTQKPVSKPESATNATASSTFFDIYGPEAKAEVVFKTPDADSTLNLQDVQGLVTWVLAEGFMPSWIFIKNKPLIPKVVMLYVPGLDAALYMSQSKILSGLKEFCGNPRAVLALSCVSDRMQTIDALLTCKLKRKRNEVDSALKKHDQTSEQGGCSGGSNNSSSMEVLKDLPFPITYYTLTAKELEDNGYCHDQPGFVSTLPAPSGCRLYEMLALDCEMCVTSEGFELTRISLVDIKGQVVLDKLVKPSNRIIDYNTRYSGITCEMLNGVTTGLKDVQEDFLKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGASYKTALRVLTRRFLSREIQESRNGHDSIEDARAAMELALEVEKYGPEFGSPPSFMRKKLLTVLNDYGKTSSFIDDISIVRRYTSEASHAFPVSSDVEALSKAKKEVKNDKVHFVWTQFSELNSYFKKQAEDTDKLNAKLAEMISLLTCNKKSTTPKGIKFSVTSELKDILTCIDTRIRSLYHELPANTMLIICTGHGDTAIVHRLRKMLREQIETTVSREKLVKVLEELQAQAEVALCFVGVKH* 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13418281 13429828 - Vvi18g1196 Vvi18g1196 780899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1196 572 PANTHER LD29573P 8 557 - -
Vvi18g1196 572 Pfam Exonuclease 219 365 IPR013520 -
Vvi18g1196 572 MobiDBLite consensus disorder prediction 146 168 - -
Vvi18g1196 572 MobiDBLite consensus disorder prediction 1 20 - -
Vvi18g1196 572 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 8 557 - -
Vvi18g1196 572 Gene3D - 215 374 IPR036397 GO:0003676
Vvi18g1196 572 SUPERFAMILY Ribonuclease H-like 217 370 IPR012337 -
Vvi18g1196 572 SMART exoiiiendus 216 375 IPR013520 -
Vvi18g1196 572 CDD REX1_like 218 367 IPR034922 -
Vvi18g1196 572 MobiDBLite consensus disorder prediction 153 168 - -
Vvi18g1196 572 Coils Coil 137 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1196 K14570 REX1, REXO1, REXO5, RNH70; RNA exonuclease [EC:3.1.-.-] - vvi:100242014 1115.91
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1196 . Blo12g01111 . . . . Bma04g00026 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1450 Cone7ag1482 . . . . . . . . . . . . . . . . . . . . Car09g00971 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009337 0 1 1 1 0 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 2 1 1 1 2 1 34