Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi18g1197 | ATGTCAAGGGTAGTACAGCAGCCCATAGGGCAAAAGAGACTGACGAACGTGGCGGTGGTTCGTCTCAAAAAGAAGGGTATTCGCTTCGAAATTGCTTGTTATAAGAACAAGGTCCTCTCTTGGCGCTCTGGAGTAGAGAAAGATTTGGATGAAGTATTGCAGTCACATATTGTTTATTCAAATGTTTCAAAAGGAGTTCTTGCCAAATCAAAAGATTTGGAAGCAGCCTTTGGGAAAGAGAGAGATCAGACTGAAATTTTGTTGGAGATTTTGGACAAAGGAGAGCTTCAGGTTGCAGGAAAGGAGAGAGAATCTCAGTTATCAAGTCAGTTTCGGGATATTGCCACAATAGTTATGCAGAAGACCATCAATCCTGAAACACAACGTCCATATACCAGTAGCATGATTGAGCGACTAATGCATGAAATCCATTTTTCTGTTGATCCCAACAGCAGCTCAAAGAAGCAGGCACTAGAGGTTATTCGTGAGCTTCAGAAGCACTTCCCCATAAAACGCTGTCCAATGAGACTGCGGCTCACTGTTCCTCAACAGAATTTTTCTTCTCTTCTAGAGAAACTCAATGTCTGGAATGCTAGCATTGTTTCAAAAGATGAATCTGGGGGTCAACTATCCATTATCTGTGAAATGGAGCCAGGTATTTTCCGAGATTGTGATGCCCTGGTGAGGAACCTGCAGGGAAGGTTGGAAATTCTTGCTGTCTCTCTGCACATGGAGGGGGACACCCATGTGGATGATTATGATGATCATGAGCATGTGCCATCAAGGCTACCTAAGGAGTCTGCAGATCCTGTGCTCCAACTGAGTGAGAAAGTACAGAGACAGACAATCTCTGTGGGAAGCAGTAGTACTGAAGGGGAGGTAAAACAAAACAAGTGCAGCACATGTGATGCGTTTGTAGGGGATTCCAAGCAGTATAGAGAACATTTTAAAAGTGAGTGGCACAAGCATAATTTAGGACGCAAAACTAGGCAACTCCCTCCCCTTTCTGCAGAAGAGTGCCTGACTGATATGGAAATGAATGACTTGAAGGCAGATCTGAAAGATTATTCATTTTGA | 1077 | 43.45 | MSRVVQQPIGQKRLTNVAVVRLKKKGIRFEIACYKNKVLSWRSGVEKDLDEVLQSHIVYSNVSKGVLAKSKDLEAAFGKERDQTEILLEILDKGELQVAGKERESQLSSQFRDIATIVMQKTINPETQRPYTSSMIERLMHEIHFSVDPNSSSKKQALEVIRELQKHFPIKRCPMRLRLTVPQQNFSSLLEKLNVWNASIVSKDESGGQLSIICEMEPGIFRDCDALVRNLQGRLEILAVSLHMEGDTHVDDYDDHEHVPSRLPKESADPVLQLSEKVQRQTISVGSSSTEGEVKQNKCSTCDAFVGDSKQYREHFKSEWHKHNLGRKTRQLPPLSAEECLTDMEMNDLKADLKDYSF* | 359 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 13430849 | 13443079 | + | Vvi18g1197 | Vvi18g1197 | 780900 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi18g1197 | 358 | Pfam | SBDS protein, domain II | 112 | 172 | IPR018978 | GO:0042254 | |
Vvi18g1197 | 358 | Pfam | Shwachman-Bodian-Diamond syndrome (SBDS) protein | 16 | 103 | IPR019783 | - | |
Vvi18g1197 | 358 | PANTHER | BNAANNG06530D PROTEIN | 1 | 358 | - | - | |
Vvi18g1197 | 358 | Gene3D | - | 175 | 251 | - | - | |
Vvi18g1197 | 358 | SUPERFAMILY | FYSH domain | 13 | 97 | IPR036786 | - | |
Vvi18g1197 | 358 | PANTHER | RIBOSOME MATURATION PROTEIN SBDS | 1 | 358 | IPR039100 | - | |
Vvi18g1197 | 358 | Gene3D | - | 2 | 97 | IPR036786 | - | |
Vvi18g1197 | 358 | SUPERFAMILY | Hypothetical protein AF0491, middle domain | 99 | 172 | IPR037188 | - | |
Vvi18g1197 | 358 | SUPERFAMILY | beta-beta-alpha zinc fingers | 287 | 341 | IPR036236 | - | |
Vvi18g1197 | 358 | Gene3D | - | 101 | 173 | IPR037188 | - | |
Vvi18g1197 | 358 | TIGRFAM | RNA_SBDS: rRNA metabolism protein, SBDS family | 13 | 228 | IPR002140 | GO:0042256 | |
Vvi18g1197 | 358 | Pfam | SBDS protein, C-terminal domain | 175 | 239 | IPR046928 | - | |
Vvi18g1197 | 358 | ProSitePatterns | Uncharacterized protein family UPF0023 signature. | 46 | 65 | IPR018023 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi18g1197 | K14574 | - | vvi:100259091 | 711.835 |