Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1197 ATGTCAAGGGTAGTACAGCAGCCCATAGGGCAAAAGAGACTGACGAACGTGGCGGTGGTTCGTCTCAAAAAGAAGGGTATTCGCTTCGAAATTGCTTGTTATAAGAACAAGGTCCTCTCTTGGCGCTCTGGAGTAGAGAAAGATTTGGATGAAGTATTGCAGTCACATATTGTTTATTCAAATGTTTCAAAAGGAGTTCTTGCCAAATCAAAAGATTTGGAAGCAGCCTTTGGGAAAGAGAGAGATCAGACTGAAATTTTGTTGGAGATTTTGGACAAAGGAGAGCTTCAGGTTGCAGGAAAGGAGAGAGAATCTCAGTTATCAAGTCAGTTTCGGGATATTGCCACAATAGTTATGCAGAAGACCATCAATCCTGAAACACAACGTCCATATACCAGTAGCATGATTGAGCGACTAATGCATGAAATCCATTTTTCTGTTGATCCCAACAGCAGCTCAAAGAAGCAGGCACTAGAGGTTATTCGTGAGCTTCAGAAGCACTTCCCCATAAAACGCTGTCCAATGAGACTGCGGCTCACTGTTCCTCAACAGAATTTTTCTTCTCTTCTAGAGAAACTCAATGTCTGGAATGCTAGCATTGTTTCAAAAGATGAATCTGGGGGTCAACTATCCATTATCTGTGAAATGGAGCCAGGTATTTTCCGAGATTGTGATGCCCTGGTGAGGAACCTGCAGGGAAGGTTGGAAATTCTTGCTGTCTCTCTGCACATGGAGGGGGACACCCATGTGGATGATTATGATGATCATGAGCATGTGCCATCAAGGCTACCTAAGGAGTCTGCAGATCCTGTGCTCCAACTGAGTGAGAAAGTACAGAGACAGACAATCTCTGTGGGAAGCAGTAGTACTGAAGGGGAGGTAAAACAAAACAAGTGCAGCACATGTGATGCGTTTGTAGGGGATTCCAAGCAGTATAGAGAACATTTTAAAAGTGAGTGGCACAAGCATAATTTAGGACGCAAAACTAGGCAACTCCCTCCCCTTTCTGCAGAAGAGTGCCTGACTGATATGGAAATGAATGACTTGAAGGCAGATCTGAAAGATTATTCATTTTGA 1077 43.45 MSRVVQQPIGQKRLTNVAVVRLKKKGIRFEIACYKNKVLSWRSGVEKDLDEVLQSHIVYSNVSKGVLAKSKDLEAAFGKERDQTEILLEILDKGELQVAGKERESQLSSQFRDIATIVMQKTINPETQRPYTSSMIERLMHEIHFSVDPNSSSKKQALEVIRELQKHFPIKRCPMRLRLTVPQQNFSSLLEKLNVWNASIVSKDESGGQLSIICEMEPGIFRDCDALVRNLQGRLEILAVSLHMEGDTHVDDYDDHEHVPSRLPKESADPVLQLSEKVQRQTISVGSSSTEGEVKQNKCSTCDAFVGDSKQYREHFKSEWHKHNLGRKTRQLPPLSAEECLTDMEMNDLKADLKDYSF* 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13430849 13443079 + Vvi18g1197 Vvi18g1197 780900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1197 358 Pfam SBDS protein, domain II 112 172 IPR018978 GO:0042254
Vvi18g1197 358 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 103 IPR019783 -
Vvi18g1197 358 PANTHER BNAANNG06530D PROTEIN 1 358 - -
Vvi18g1197 358 Gene3D - 175 251 - -
Vvi18g1197 358 SUPERFAMILY FYSH domain 13 97 IPR036786 -
Vvi18g1197 358 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 358 IPR039100 -
Vvi18g1197 358 Gene3D - 2 97 IPR036786 -
Vvi18g1197 358 SUPERFAMILY Hypothetical protein AF0491, middle domain 99 172 IPR037188 -
Vvi18g1197 358 SUPERFAMILY beta-beta-alpha zinc fingers 287 341 IPR036236 -
Vvi18g1197 358 Gene3D - 101 173 IPR037188 -
Vvi18g1197 358 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 228 IPR002140 GO:0042256
Vvi18g1197 358 Pfam SBDS protein, C-terminal domain 175 239 IPR046928 -
Vvi18g1197 358 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1197 K14574 - vvi:100259091 711.835