Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1199 ATGGCTCTGGAGAATTGTTTTCAAGTGAGCACAGTGTCTTGTGCCAGAGCTGGTGTTCTTCAGTCCCACCATCCATTTTCTGCTAAGGAAAAGCTTAATTTGCCGACATGTAAAGGAGTCAAACCGTCCATTTTATCATTCTCCTCCTCACCTTCTTCCTTGGATTACTCCTTCCATCGCATCTGCCGCAAGTCCCGCATTGTCTGCAAAGCTCGCGAGGCCGTAGATGAAGTTCAAGTGGTGACAGATTCAAGCTGGAGTAACGTTGTGATTGCAAGTGAAAACCCAGTTCTAGTGGAGTTTTGGGCACCATGGTGTGGGCCTTGTCGGATGATTGCGCCAGTGATCGATGAATTAGCCAAGGAGTATGCAGGAAAGATCGTGTGCTGCAAGGTCAACACTGACGATTGTCCAAACATTGCCACCCAGTATGGGATAAGGAGCATCCCCACTGTTCTCTTTTTCAAGAATGGGGAGAGGAAGGAGAGTGTGATTGGTGCGGTGCCCAAGTCCACCCTCACTGCCACCATAGAGAAATATGTAGACATGTGA 552 48.37 MALENCFQVSTVSCARAGVLQSHHPFSAKEKLNLPTCKGVKPSILSFSSSPSSLDYSFHRICRKSRIVCKAREAVDEVQVVTDSSWSNVVIASENPVLVEFWAPWCGPCRMIAPVIDELAKEYAGKIVCCKVNTDDCPNIATQYGIRSIPTVLFFKNGERKESVIGAVPKSTLTATIEKYVDM* 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13444643 13445959 + Vvi18g1199 Vvi18g1199 780902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1199 183 PRINTS Thioredoxin family signature 97 105 - -
Vvi18g1199 183 PRINTS Thioredoxin family signature 105 114 - -
Vvi18g1199 183 PRINTS Thioredoxin family signature 145 156 - -
Vvi18g1199 183 PANTHER GEO12009P1 33 180 - -
Vvi18g1199 183 TIGRFAM thioredoxin: thioredoxin 82 180 IPR005746 GO:0015035
Vvi18g1199 183 ProSitePatterns Thioredoxin family active site. 98 116 IPR017937 -
Vvi18g1199 183 PANTHER THIOREDOXIN M-TYPE PROTEIN 33 180 - -
Vvi18g1199 183 SUPERFAMILY Thioredoxin-like 66 182 IPR036249 -
Vvi18g1199 183 Gene3D Glutaredoxin 78 182 - -
Vvi18g1199 183 CDD TRX_family 90 178 - -
Vvi18g1199 183 ProSiteProfiles Thioredoxin domain profile. 38 182 IPR013766 -
Vvi18g1199 183 Pfam Thioredoxin 78 179 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1199 K03671 trxA; thioredoxin 1 - vvi:100264263 364.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1199 Blo01g01324 Blo12g01109 . Bda03g00029 . Bpe04g00019 . . Cmo04g02534 Cmo15g00640 . . . . Sed11g1319 . Cpe13g00660 Bhi04g01828 Tan11g1203 Cmetu01g1872 . Hepe02g2753 . Lcy10g1305 Cla08g00654 Cam08g1084 Cec08g0670 Cco08g0779 Clacu08g0788 . Cre08g0593 . . Cone17ag0803 Cone20ag0407 . . . Cme03g00422 . . . . . . . . . . . . . Car04g02331 Car15g00581 Cpe01g02094 . . . . . . . . . . . . . . . Lsi08g00514 . Chy03g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008381 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35