Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1200 ATGCAGCTACAACAACAGCAGCAACAGCAACTTTTGAAGGCTATTCCTCAGCAACGGTCCCAACTACAACAACAGCAATTTCAAGCGCAGAATTTGCCTTTGAGATCTCCTGTGAAACCAGGATATGAACCTGGGATGTGTGCCCGGCGGCTGACATATTACATGTATCAGCAACAACACAAACCCACTGACAACAATATTGAATTCTGGAGAAAGTTTGTTGCTGAGTATTTTGCTCCGCATGCCAAGAAGAAGTGGTGTGTTTCTATGTATGGAAGTGGCCGACAAACAACTGGAGTTTTTCCTCAGGATGTGTGGCACTGTGAGATATGCAACCGCAAGCCAGGACGAGGTTTTGAAGCGACTGTGGAGGTTCTGCCCAGGCTTTTCAAAATCAAGTATGAAAGTGGTACTCTGGAAGAACTTCTTTATGTTGATATGCCCCGTGAGTATCAAAATTCGTCTGGGCAAATTATCCTGGACTATGCAAAAGCAATACAGGAAAGCGTCTTTGAACAGCTTCGAGTCGTTCGTGAAGGTCAACTTCGGATAGTTTTCTCACCTGACTTGAAGATTTGCTCGTGGGAGTTCTGTGCTCGACGTCATGAGGAGCTTATCCCTAGAAGATTGTTGATACCTCAGGTTAGTCAGCTTGGGGCTGCAGCTCAGAAATACCAGTCTGCTACTCAAAATGCATCATCCAATTTGTCTGTTCCAGAGTTACAAAGCAACTGTAATATGTTTGTTGCGTCAGCTCGTCAATTAGCAAAAGCTTTGGAAGTACCATTAGTAAATGATTTGGGATATACAAAGAGATATGTTCGCTGCCTTCAGATATCAGAAGTCGTTAATAGCATGAAAGACTTGATTGATTACAGTCGAAACACAGGAACTGGACCTATGGAGAGCTTGGCCAAGTTCCCGCGGAGAACAAATGCCTCATCTGGCTTTCATAACCAAGCTCAACAACCGGAGGAACAGATGCAGCAGCAACAACAACAGCAACAACAAACGATTGCTCAGAATGCAAACAATGATCCAAGTTCTGTCCAGGCCACTGCGATGCAGCTTGCTTCTAGCAATGTCCCTATGGTGGAGGTGCTGTTCAGATTCCATCCCCTGGTTCCTCCAGTTCAATACCGCAGCCTCAACCGAATCCTTCTCCATTCCAATCACCAACACCCTCTTCATCTAACAATCCCCCCCAAACTTCCCATGGCCGACCCAAGTGATTCGCAGAGCTCAGTCCAGAAAATCATTCAAGAAATGATGATGTCATCCCAACTTAATGGCACAGCGGGTATGGTGAGGAATGGGCCAGGAAACAGCACTCCAGGTATTGGAGGCGGTGGATTTGGCAGCATGGGTGGACTAGGGCAGTCTGCTATGGTTAATGGAATGAGAGCTGCAATGGGTAATAACTCCTTGACTATAAATGGAAGGGTGGGCATGACACCCATGACTCGGGATCAAAGCATTAATCATCAACAAGATTTGGGGAACCAGCTGCTTGGCGGGCTAGGAGCAGTTAATGGATTCAATAATCTACAGTTTGATTGGAAGCAGTCACCGTGA 1575 45.97 MQLQQQQQQQLLKAIPQQRSQLQQQQFQAQNLPLRSPVKPGYEPGMCARRLTYYMYQQQHKPTDNNIEFWRKFVAEYFAPHAKKKWCVSMYGSGRQTTGVFPQDVWHCEICNRKPGRGFEATVEVLPRLFKIKYESGTLEELLYVDMPREYQNSSGQIILDYAKAIQESVFEQLRVVREGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQSATQNASSNLSVPELQSNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRNTGTGPMESLAKFPRRTNASSGFHNQAQQPEEQMQQQQQQQQQTIAQNANNDPSSVQATAMQLASSNVPMVEVLFRFHPLVPPVQYRSLNRILLHSNHQHPLHLTIPPKLPMADPSDSQSSVQKIIQEMMMSSQLNGTAGMVRNGPGNSTPGIGGGGFGSMGGLGQSAMVNGMRAAMGNNSLTINGRVGMTPMTRDQSINHQQDLGNQLLGGLGAVNGFNNLQFDWKQSP* 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13446198 13457203 - Vvi18g1200 Vvi18g1200 780903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1200 524 Pfam LIM-domain binding protein 50 304 IPR029005 -
Vvi18g1200 524 PANTHER EXPRESSED PROTEIN 403 522 - -
Vvi18g1200 524 PANTHER EXPRESSED PROTEIN 3 367 - -
Vvi18g1200 524 MobiDBLite consensus disorder prediction 311 351 - -
Vvi18g1200 524 PANTHER LIM DOMAIN-BINDING PROTEIN 403 522 IPR029005 -
Vvi18g1200 524 PANTHER LIM DOMAIN-BINDING PROTEIN 3 367 IPR029005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi4g1298 Vvi18g1200 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1200 - - egt:105972956 684.485