Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1202 ATGAAGGCGTTGATGGTTGAGGCCAATAGTTTTACCTTTACCTTCCTTCTTAAATGTTTTGAAACCTCACAAGCCTTGGAAGATGGTAGAGTGATACATGGTGAAATTTTGAAGTTGGGTTTTGGTTCTAGTGTGTTTGTTCAGAATTCCCTTTTGGGTTTCTATGCAAACTGCAGTGAGAATTTAGGTTCTGCTTACCGGGTATTTGAGGAAATGCCTGAACGAGATGTTATTTCATGGAATTCTATGATTAGTGCTTATATGACTCGTGGGGAGATACAATCTGCAATAGGGTTGTTGGATAAGATGCCAGAGCGGAACATTGTGACGTGGAATTCTGTTGTTTGTGGGCTGTCTAAGGCTGGGAACATGGAGTTAGCTCATTCTGTCTTTGAGCAGATGCCACTGAGAAATGAGGTTTCTTGGAATTCAATGATTTCTGGATATGTAAGGATTGGTGATGTGAGGGCTGCACAGTCTATTTTTTATCAGATGCCTGAGAAAACTGTGGTTTCCTGGACGGCCATGATTTCAGGATATGCAACAAATGGAGATCTTAAATCTGCAGAAAACATTTTCAATCATATGCCAGTTAAAAATGTGGTCTCATGGAATGCTATGATTTCAGGTTATGTTCACAACCATGAGTTTGATCAAGCTCTGTGTGTATTTCATCATATGTTAATCAATGGTGAGTGCAGGCCTGACCAGACTACTTTGATCAGTATACTGTCTGCCTGTGCTCATTTGGGGTCTCTTGAACATGGGAAGTGGATCAATTCATATATTAAGAAAAACAAGCTTCACTTGTCAATTCCATTAGGCAATGCTTTGATAGACATGTTTGCAAAATGTGGAGATGTAGAAAATGCAAAAGAAGTGTTTCATCATATGTCTAAAAGATGTATAATCACATGGACAACAATGGTTTCAGGGCTTGCGGTTAATGGGAAATGTAGAGAAGCCATAAATCTCTTTGATAAGATGTGTCTAGAAGGAACAAAACCAGATGATGTTATCTTCATTGCTGTTCTGTCAGCTTGCACTCATGGAGGTCTGGTGGAAGAAGGTAAAAGGGTATTTGATCAAATGGTGCAAGAATTTGGTATTAAACCCCGAATTGAGCATTATGGTTGCATGGTTGATCTTCTTGGTCGAGCAGGGAAGTTAGAAGAAGCAAAAATTATGGATCAGGAGCCTTCAAATCCCAGCTATTTAACTTTGGTTTCAAATTTGAGTGCTTCATTTGGACGGTGGGAAGATGTCTTGAGCTTTCGGGTAGCAATGAGACAGCAAAGAATGGAAAAAGTACCTGGTTGTAGCTCAATCCAAGTAGGGAACAGGGTCCATGAATTTCTAGCTAAGGATACACGGCATGTGCAAAGGAAGGAAATTTATAGAGCTTTGGTTTGTTTAAATGGACAGTTGAAAGTTGAATGTGATTGTGCTATAAGAATATCACAATGA 1467 39.47 MKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAKIMDQEPSNPSYLTLVSNLSASFGRWEDVLSFRVAMRQQRMEKVPGCSSIQVGNRVHEFLAKDTRHVQRKEIYRALVCLNGQLKVECDCAIRISQ* 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13489002 13490580 - Vvi18g1202 Vvi18g1202 780905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1202 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Vvi18g1202 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 235 IPR002885 -
Vvi18g1202 488 Pfam PPR repeat 140 168 IPR002885 -
Vvi18g1202 488 Pfam PPR repeat 109 135 IPR002885 -
Vvi18g1202 488 Pfam PPR repeat 78 108 IPR002885 -
Vvi18g1202 488 Pfam E motif 393 444 IPR046848 -
Vvi18g1202 488 PANTHER - 1 393 - -
Vvi18g1202 488 PANTHER - 394 479 - -
Vvi18g1202 488 Gene3D Tetratricopeptide repeat domain 276 485 IPR011990 GO:0005515
Vvi18g1202 488 Gene3D Tetratricopeptide repeat domain 137 273 IPR011990 GO:0005515
Vvi18g1202 488 Gene3D Tetratricopeptide repeat domain 1 136 IPR011990 GO:0005515
Vvi18g1202 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 76 110 IPR002885 -
Vvi18g1202 488 PANTHER OS01G0913400 PROTEIN-RELATED 394 479 - -
Vvi18g1202 488 PANTHER OS01G0913400 PROTEIN-RELATED 1 393 - -
Vvi18g1202 488 TIGRFAM PPR: pentatricopeptide repeat domain 140 167 IPR002885 -
Vvi18g1202 488 TIGRFAM PPR: pentatricopeptide repeat domain 304 337 IPR002885 -
Vvi18g1202 488 TIGRFAM PPR: pentatricopeptide repeat domain 276 301 IPR002885 -
Vvi18g1202 488 TIGRFAM PPR: pentatricopeptide repeat domain 78 109 IPR002885 -
Vvi18g1202 488 TIGRFAM PPR: pentatricopeptide repeat domain 171 200 IPR002885 -
Vvi18g1202 488 TIGRFAM PPR: pentatricopeptide repeat domain 202 236 IPR002885 -
Vvi18g1202 488 TIGRFAM PPR: pentatricopeptide repeat domain 109 135 IPR002885 -
Vvi18g1202 488 TIGRFAM PPR: pentatricopeptide repeat domain 340 372 IPR002885 -
Vvi18g1202 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 372 IPR002885 -
Vvi18g1202 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Vvi18g1202 488 Pfam PPR repeat family 199 248 IPR002885 -
Vvi18g1202 488 Pfam PPR repeat family 302 348 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1202 - - - vvi:100262528 973.385
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1202 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069046 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1