Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1207 ATGCCTCGCCGGAGACACGACGACGACGACGATGATCTGGAGCCCGAGGAAGATGATGTTCTCGACGACGACGAAGATTACGAGGACGAGGACGTCGGAGTCGGTTCAAGTCGCAAGAGGTCGAGATCTGAGTTTATAGATGATGTTGCCGAGGAGGACGACGACGAGGATGACGACGACGACGATGAAGATTTTGGAGGTAGTCGTCGCGGCAGCCACCGGGCCAAGAGGCGGTCTGGCTCCGAGTTTCTGGACCTTGAAGCTGCGGTCGACAGTGATGAGGAAGAGGAGGAGGAAGACGGCGAGGATGATTTCATTGTTGATGCTGGAGCTGAATTACCCGATGAAGATGATGGTCAGAGGATGCGTCGTCGCCCCTTGCTACCACAAGAAGACGAGCAAGAAGATTTTGAGGCTCTAGAGAGAAAGATTCAGGAAAGATATGGTAAGTCAAGTCATGCAGAATATGATGAGGAGACCACGGAGGTAGAACAGCAAGCTCTTTTGCCATCTGTTAGGGATCCTAAGTTGTGGATGGTGAAATGTGCGATTGGTCATGAGCGAGAGGCAGCTGTTTGCCTAATGCAGAAATCCATCGATAAAGGACCTGAGGTGCAGATCAGGTCTGCTATTGCCCTAGATCATCTAAAAAACTATATATATATTGAAGCTGACAAAGAAGCTCATGTGAAGGAGGCATGCAAAGGTCTACGCAACATATATGCCCAGAAAGTAATGCTTGTTCCGATTAGAGAAATGACTGATGTACTTTCTGTTGAAAGCAAAGCAGTTGATCTTTCTAGGAATACTTGGGTCAGAATGAAGATTGGGACATATAAAGGAGATCTGGCAAAAGTAGTTGATGTGGACAATGTGCGACAGAGAGTTACTGTGCAACTAATTCCAAGAATTGACTTGCAAGCTCTTGCAAATAAGCTGGAAGGTAGAGAAGTTGTGACAAAGAAGGCCTTTAAACCTCCTCCACGTTTTATGAATGTTGAGGAAGCTAGAGAAATGCATATCCGTGTAGAGCGTAGGCGGGATCCGATGACTGGTGATTATTTCGAGAATATAGGTGGTATGATGTTCAAGGATGGTTTCTTGTATAAAACAGTGTCCATGAAATCAATTAGTGTTCAGAACATACAGCCCACATTTGATGAACTTGAGAAATTTCGAACACCTGGCGAGACTGAAGATGGTGATATGGCTAGTTTGTCAACTTTGTTTGCAAATAGAAAGAAAGGTCACTTCATGAAAGGTGATGCAGTTATTATAGTGAAGGGAGATCTAAAAAATTTGAAGGGATGGGTTGAGAAGGTTGAGGAAGAGAATGTTCACATCAGACCAGAAATGAAGGGTCTTCCAAAAACTCTTGCTGTAAATGAAAAAGAGCTATGCAAGTACTTTGAACCAGGGAATCATGTGAAGGTTGTCTCTGGCACACAGGAAGGTGCGACTGGTATGGTTGTTAAGGTTGAGGGCCATGTGCTCATCATTTTGTCCGATACAACCAAGGAACATCTTCGTGTGTTTGCTGATGATGTTGTGGAGAGCTCAGAGGTAACTTCTGGTGTCACTAGAATTGGGGACTATGAGCTTCATGATCTCGTGCTGCTGGACAATCTGAGCTTCGGTGTAATTATACGTGTTGAAAGTGAAGCTTTCCAGGTTCTAAAGGGAGTTCCAGATAGACCTGAAGTGGTGCTTGTGAAGCTAAGAGAGATAAAATTCAAGATTGATAAGAGGGTAAATGTCCAAGATCGATTTAAGAACACGGTATCTGTAAAAGATGTTGTTAGAATTCTTGACGGACCTTGCAAAGGGAAACAAGGTCCAGTTGAACATATATATAAAGGAGTTCTGTTCATTTATGATCGACATCACCTTGAGCATGCTGGTTTTATTTGCGCTAAATCCCACTCTTGTGTTGTCGTAGGAGGATCACGCAGTAATGCTGACAGAAGTGGTGATTCCTTCTCAAGATTTGCCAATCTCAGAACACCACCTCGCGTTCCTGAGTCACCAAGGAGATTCCCTCGAGGAGGTCGTCCAATGGACTCTGGAGGAAGGCATAGGGGTGGAAGAGGACATGATTCATTGATTGGTAGTACAATAAAAATTCGCCAGGGACCTTTTAAGGGTTACCGTGGGCGTGTTGTTGATGTTAATGGTCAATCTGTTCGGGTTGAATTGGAGTCCCAAATGAAGGTTGTTACAGTTGATCGGAATCAGATTTCTGATAATGTGGCTGTTGCAACCCCATACCGTGATGCACCTCGATATGGTATGGGAAGTGAAACACCCATGCATCCTTCACGAACTCCACTGCATCCATATATGACTCCTATGAGGGATGTTGGAGCTACTCCTATACATGATGGTATGAGAACACCCATGCGGGACCGCGCATGGAATCCTTATGCACCAATGAGTCCTCCAAGGGACAATTGGGAAGAAGGAAATCCTGACTCTTGGGTAACCACCAGTCCACAGTATCAGCCTGGAAGCCCTCCTTCACGAACATATGAAGCACCTACTCCAGGTTCAGGCTGGGCTAGCACTCCTGGTGGCAATTACAGTGAAGCTGGAACACCGAGGGATAGTACCCCTGCTTATGCAAATGTTCCCAGTCCTTACTTGCCTTCAACTCCTGGTGGACAACCTATGACACCAAATTCAGTATCTTACCTACCAGGTACTCCTGGGGGGCAGCCAATGACGCCTGGAACTGGTGTGGATGTTATGTCTCCAATAGGCGGAGAACAAGAAGGGCCATGGTTTATGCCAGACATATTGGTCCACATACGCAGGCCTGGAGAAGAGAACACCCTAGGAGTTATCCGGGAGGTGCTTCCGGATGGTACTTATAGAGTGGGCCTTGGATCCAGTGGTGGGGGTGAAATAGTAACTGTCCTGCATGCTGAAATTGATGCTGTGGCACCAAGAAAATCAGACAAGATCAAGATTATGGGTGGTGCACATCGTGGTGCCACTGGCAAGCTGATTGGTGTTGATGGCACTGATGGAATCGTAAAGGTAGATGATACCCTTGATGTTAAGATATTGGACATGGTTCTCTTGGCAAAACTAGTACAACCATGA 3105 45.89 MPRRRHDDDDDDLEPEEDDVLDDDEDYEDEDVGVGSSRKRSRSEFIDDVAEEDDDEDDDDDDEDFGGSRRGSHRAKRRSGSEFLDLEAAVDSDEEEEEEDGEDDFIVDAGAELPDEDDGQRMRRRPLLPQEDEQEDFEALERKIQERYGKSSHAEYDEETTEVEQQALLPSVRDPKLWMVKCAIGHEREAAVCLMQKSIDKGPEVQIRSAIALDHLKNYIYIEADKEAHVKEACKGLRNIYAQKVMLVPIREMTDVLSVESKAVDLSRNTWVRMKIGTYKGDLAKVVDVDNVRQRVTVQLIPRIDLQALANKLEGREVVTKKAFKPPPRFMNVEEAREMHIRVERRRDPMTGDYFENIGGMMFKDGFLYKTVSMKSISVQNIQPTFDELEKFRTPGETEDGDMASLSTLFANRKKGHFMKGDAVIIVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNEKELCKYFEPGNHVKVVSGTQEGATGMVVKVEGHVLIILSDTTKEHLRVFADDVVESSEVTSGVTRIGDYELHDLVLLDNLSFGVIIRVESEAFQVLKGVPDRPEVVLVKLREIKFKIDKRVNVQDRFKNTVSVKDVVRILDGPCKGKQGPVEHIYKGVLFIYDRHHLEHAGFICAKSHSCVVVGGSRSNADRSGDSFSRFANLRTPPRVPESPRRFPRGGRPMDSGGRHRGGRGHDSLIGSTIKIRQGPFKGYRGRVVDVNGQSVRVELESQMKVVTVDRNQISDNVAVATPYRDAPRYGMGSETPMHPSRTPLHPYMTPMRDVGATPIHDGMRTPMRDRAWNPYAPMSPPRDNWEEGNPDSWVTTSPQYQPGSPPSRTYEAPTPGSGWASTPGGNYSEAGTPRDSTPAYANVPSPYLPSTPGGQPMTPNSVSYLPGTPGGQPMTPGTGVDVMSPIGGEQEGPWFMPDILVHIRRPGEENTLGVIREVLPDGTYRVGLGSSGGGEIVTVLHAEIDAVAPRKSDKIKIMGGAHRGATGKLIGVDGTDGIVKVDDTLDVKILDMVLLAKLVQP* 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13526073 13535704 + Vvi18g1207 Vvi18g1207 780910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1207 1034 MobiDBLite consensus disorder prediction 1 126 - -
Vvi18g1207 1034 MobiDBLite consensus disorder prediction 799 911 - -
Vvi18g1207 1034 MobiDBLite consensus disorder prediction 87 113 - -
Vvi18g1207 1034 MobiDBLite consensus disorder prediction 822 872 - -
Vvi18g1207 1034 PANTHER SUPPRESSOR OF TY 5 28 1031 IPR039659 GO:0006357|GO:0032784
Vvi18g1207 1034 MobiDBLite consensus disorder prediction 758 778 - -
Vvi18g1207 1034 SUPERFAMILY Translation proteins SH3-like domain 673 739 IPR008991 -
Vvi18g1207 1034 CDD KOW_Spt5_1 269 306 IPR041973 -
Vvi18g1207 1034 Pfam Early transcription elongation factor of RNA pol II, NGN section 176 257 IPR005100 -
Vvi18g1207 1034 SUPERFAMILY Translation proteins SH3-like domain 461 520 IPR008991 -
Vvi18g1207 1034 MobiDBLite consensus disorder prediction 677 698 - -
Vvi18g1207 1034 CDD KOW_Spt5_5 699 747 IPR041978 -
Vvi18g1207 1034 SMART nusgn_4 174 260 IPR006645 GO:0140673
Vvi18g1207 1034 Pfam Spt5 transcription elongation factor, acidic N-terminal 83 170 IPR022581 -
Vvi18g1207 1034 Gene3D - 682 749 IPR014722 -
Vvi18g1207 1034 CDD KOW_Spt5_2 418 468 IPR041975 -
Vvi18g1207 1034 MobiDBLite consensus disorder prediction 48 64 - -
Vvi18g1207 1034 Pfam KOW motif 472 513 IPR005824 -
Vvi18g1207 1034 Pfam KOW motif 703 733 IPR005824 -
Vvi18g1207 1034 MobiDBLite consensus disorder prediction 11 31 - -
Vvi18g1207 1034 PIRSF Spt5 2 1034 IPR017071 GO:0006357|GO:0032784
Vvi18g1207 1034 Gene3D - 265 307 IPR014722 -
Vvi18g1207 1034 Gene3D - 472 521 IPR014722 -
Vvi18g1207 1034 CDD KOW_Spt5_6 976 1032 IPR041980 -
Vvi18g1207 1034 CDD KOW_Spt5_4 597 639 IPR041977 -
Vvi18g1207 1034 Gene3D - 412 469 IPR014722 -
Vvi18g1207 1034 Gene3D - 156 258 IPR036735 GO:0006355
Vvi18g1207 1034 SMART kow_9 981 1008 IPR005824 -
Vvi18g1207 1034 SMART kow_9 699 726 IPR005824 -
Vvi18g1207 1034 SMART kow_9 417 444 IPR005824 -
Vvi18g1207 1034 SMART kow_9 469 496 IPR005824 -
Vvi18g1207 1034 SMART kow_9 593 620 IPR005824 -
Vvi18g1207 1034 SMART kow_9 265 292 IPR005824 -
Vvi18g1207 1034 ProSitePatterns Ribosomal protein L24 signature. 421 438 IPR005825 GO:0003735|GO:0005840|GO:0006412
Vvi18g1207 1034 MobiDBLite consensus disorder prediction 32 47 - -
Vvi18g1207 1034 CDD NGN_Euk 176 258 IPR039385 -
Vvi18g1207 1034 MobiDBLite consensus disorder prediction 887 901 - -
Vvi18g1207 1034 MobiDBLite consensus disorder prediction 652 702 - -
Vvi18g1207 1034 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 28 1031 - -
Vvi18g1207 1034 CDD KOW_Spt5_3 469 519 IPR041976 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1207 K15172 SUPT5H, SPT5; transcription elongation factor SPT5 - vvi:100267652 1968.74
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1207 Blo01g01326 . Bda01g00691 . Bpe02g00614 . . Bma01g02111 Cmo04g02539 Cmo15g00634 . . . . Sed01g2883 . Cpe13g00663 Bhi04g01823 Tan11g1195 Cmetu03g0776 . Hepe02g2759 . Lcy10g1309 Cla08g00661 Cam08g1091 Cec08g0676 Cco08g0785 Clacu08g0796 . Cre08g0599 . . . . . . . Cme03g00404 . . . . . . . . . . . . . Car04g02336 Car15g00576 Cpe01g02098 . . . . . . . . . . . . . . . Lsi08g00519 . Chy03g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005509 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 3 1 39