Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1208 ATGTCAGGCACTGCTGGTCAAGTCATCTGCTGCAAAGCTGCTGTGGCATGGGAAGCAGGGAAGCCATTAGTGATAGAAGAAGTGGAGGTGGCACCCCCACAGGCCATGGAGGTCCGTCTCAAGATCCTCTACACCTCCCTATGTCACACTGATGTCTACTTTTGGGAAGCCAAGGGACAGACCCCTTTGTTCCCTCGAATTTTCGGTCATGAAGCAGGAGGGATTGTGGAGAGTGTTGGGGAGGGTGTGACAGATCTCAAACCAGGAGACCATGTCCTCCCAATATTCACCGGAGAGTGCAAGGACTGTGCTCACTGCAAATCAGAAGAAAGCAACCTGTGTGACCTCCTCAGGATAAACACTGACAGAGGGGTGATGATCCATGATGGAAAATCAAGATTCACCATTAAGGGCAAACCCGTATACCATTTTTTGGGAACTTCCACCTTTAGTGAATACACCGTCGTTCACGTTGGCTGTGTTGCTAAGATCAATCCCTTGGCCCCTCTTGACAAAGTCTGTGTCCTCAGTTGCGGCATCTCCACAGGCCTCGGTGCCACTCTCAATGTGGCAAAACCGACCAAGGGCTCAACCGTAGCCGTCTTTGGACTGGGAGCTGTAGGTCTTGCTGCTGCAGAAGGGGCTAGGATTGCTGGCGCTTCGAGGATTATTGGTGTTGATTTGAATCCAAAAAGATACGAAGACGCCAAGAAGTTTGGTGTGACCGACTTTGTGAACCCAAAAGACCATGAGAAATCAGTTCAAGAGGTTATTGTGGAGATGACCGGTGGAGGCGTCGACAGAAGCCTCGAATGCACTGGAAATGTCAATGCCATGATTTCTGCATTCGAATGTGTTCATGATGGTTGGGGTGTTGCAGTAATTGTGGGGGTACCAAACAAAGATGATGTCTTCAAGACCCACCCCATCAACCTGTTGAATGAAAGAACTCTCAAGGGAACCTTCTTTGGGAACTACAAGCCCCGTTCTGATATTCCGGCTGTGGTGGAAAAATACATGAACAAGGAGCTTGAGGTGGAAAAATTCATCACCCATTCAGTTCCGTTCTCAGAGATCAACAAGGCCTTTGAATACATGCTAAACGGGGAAGGCCTTCGATGCATCATCCATATGGAGCCATAG 1143 49.08 MSGTAGQVICCKAAVAWEAGKPLVIEEVEVAPPQAMEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLKPGDHVLPIFTGECKDCAHCKSEESNLCDLLRINTDRGVMIHDGKSRFTIKGKPVYHFLGTSTFSEYTVVHVGCVAKINPLAPLDKVCVLSCGISTGLGATLNVAKPTKGSTVAVFGLGAVGLAAAEGARIAGASRIIGVDLNPKRYEDAKKFGVTDFVNPKDHEKSVQEVIVEMTGGGVDRSLECTGNVNAMISAFECVHDGWGVAVIVGVPNKDDVFKTHPINLLNERTLKGTFFGNYKPRSDIPAVVEKYMNKELEVEKFITHSVPFSEINKAFEYMLNGEGLRCIIHMEP* 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13539022 13541804 - Vvi18g1208 Vvi18g1208 780911

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1208 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
Vvi18g1208 380 CDD alcohol_DH_plants 9 377 - -
Vvi18g1208 380 Pfam Zinc-binding dehydrogenase 206 336 IPR013149 -
Vvi18g1208 380 Gene3D - 183 321 - -
Vvi18g1208 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 342 IPR036291 -
Vvi18g1208 380 SUPERFAMILY GroES-like 4 186 IPR011032 -
Vvi18g1208 380 PANTHER ALCOHOL DEHYDROGENASE 1 4 378 - -
Vvi18g1208 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Vvi18g1208 380 Gene3D - 19 370 - -
Vvi18g1208 380 PANTHER ALCOHOL DEHYDROGENASE 4 378 - -
Vvi18g1208 380 Pfam Alcohol dehydrogenase GroES-like domain 37 161 IPR013154 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1208 K18857 ADH1; alcohol dehydrogenase class-P [EC:1.1.1.1] - vvi:100232853 739.184
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1287 Vvi18g1208 ECH
Vvi4g1286 Vvi18g1208 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1208 . . . . . . . . . . . . Car01g00888 . . . . . . . . . . . . . . . . . . . . Cone17ag0800 Cone20ag0404 . . . . Blo17g00721 Blo18g00224 Bda08g01180 Bda13g01537 Bpe02g01599 Bpe14g00328 . Bma05g00197 Sed07g2855 Cmo01g01036 . . . . . . Cpe02g00894 Bhi09g01486 Tan01g3358 Cmetu01g1438 . Hepe03g1217 Mch11g1415 . Cla09g00911 Cam09g0963 Cec09g0968 Cco09g0974 . . Cre09g0932 . . Chy03g00638 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000873 1 4 2 1 2 2 2 2 2 3 2 2 3 3 4 4 2 6 5 2 4 2 1 3 4 2 2 5 6 6 89