Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1210 ATGTCTAATACAGCTGGTCAGGTCATTAAATGCAAGGCTGCGGTTTCATGGGAGGCAGGGAAGCCCCTGGTGATTGAAGAAGTGGAGCTGGCTCCACCACAGGCAAATGAAGTTCGTATCAAGATCCTTTTCACCTCTCTCTGTCACACTGATGTTTACTTCTGGGAGGCCAAGGGACAAAAACCAGCATTTCCTCGGATATTTGGCCATGAAGCTGCAGGAGTGGTTGAGAGCGTGGGTGAGGGCGTAACGGATCTCAAACCAGGAGACACTGTCCTCCCGGTGTTCACCGGAGAGTGCAAGGAGTGCCGGCACTGTAAATCAGAAGAGAGCAACATGTGTGACCTCCTTAGGATAAATACGGACAGGACTGTTATGCTGAGTGATGGCAAATCGAGGTTCAGCGCTAAGGGAAAGCCCATCTACCATTTCCTTGGGACCTCCACGTTCAGCGAATACACCGTTGCCCATGTTGGCAGTGTGGCCAAAATCAATCCTGCTGCCCCACTTGACAAAGTTTGCGTTCTTAGTTGTGGAATATCTACAGGTCTGGGTGCTGCTATCAATGTTGCAAAACCCAAAAAGGGCTCATCTGTTGCAGTTTTTGGATTGGGGGCTGTAGGCCTTGCAGCTGCTGAAGGGGCTAGGATTTCTGGGGCATCAAGGATCATCGGTGTCGATTTGAACGCCAGTAGATTTGAACAAGCCAAGAAGTTTGGTGTGACCGAGTTCGTGAACCCCAAAGATCATGACAAACCTGTTCAAGAGGTGATTGCTGAGATGACCGATGGAGGAGTTGACCGGAGCATAGAGTGTACTGGAAGCGTTGCCGCCATGATCTCTGCATTTGAATGTGTTCATGATGGTTGGGGCGTTGCTGTTCTTGTTGGTGTGCCAAACAGAGACGATTCATTCAAAACTCACCCCATAAATCTACTGAATGAGAGGACTCTCAAGGGCACATTTTTTGGCAACTTCAAACCCCGCACCGATCTTCCCCGTCTCGTGGAGAAATACGTGAATAAGGAGCTGGACCTGCAACTGGAGAAATTCATCACCCATGAAGTCTCCTTCTCTGATATCAACAAAGCATTTGACTACATGCTGAAGGGGGAAGGCCTCCGGTGCATCATCCGCATGGGAGCCTAG 1149 49.7 MSNTAGQVIKCKAAVSWEAGKPLVIEEVELAPPQANEVRIKILFTSLCHTDVYFWEAKGQKPAFPRIFGHEAAGVVESVGEGVTDLKPGDTVLPVFTGECKECRHCKSEESNMCDLLRINTDRTVMLSDGKSRFSAKGKPIYHFLGTSTFSEYTVAHVGSVAKINPAAPLDKVCVLSCGISTGLGAAINVAKPKKGSSVAVFGLGAVGLAAAEGARISGASRIIGVDLNASRFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTDGGVDRSIECTGSVAAMISAFECVHDGWGVAVLVGVPNRDDSFKTHPINLLNERTLKGTFFGNFKPRTDLPRLVEKYVNKELDLQLEKFITHEVSFSDINKAFDYMLKGEGLRCIIRMGA* 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13581890 13585088 + Vvi18g1210 Vvi18g1210 780913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1210 382 Pfam Alcohol dehydrogenase GroES-like domain 36 162 IPR013154 -
Vvi18g1210 382 Gene3D - 19 372 - -
Vvi18g1210 382 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 341 IPR036291 -
Vvi18g1210 382 SUPERFAMILY GroES-like 329 379 IPR011032 -
Vvi18g1210 382 SUPERFAMILY GroES-like 4 186 IPR011032 -
Vvi18g1210 382 Pfam Zinc-binding dehydrogenase 206 336 IPR013149 -
Vvi18g1210 382 PANTHER ALCOHOL DEHYDROGENASE 4 380 - -
Vvi18g1210 382 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Vvi18g1210 382 CDD alcohol_DH_plants 9 379 - -
Vvi18g1210 382 Gene3D - 183 321 - -
Vvi18g1210 382 PANTHER ALCOHOL DEHYDROGENASE 1 4 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1210 K18857 ADH1; alcohol dehydrogenase class-P [EC:1.1.1.1] - vvi:100233102 744.191
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1284 Vvi18g1210 ECH
Vvi4g1285 Vvi18g1210 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1210 Blo01g01328 . Bda01g00693 . Bpe02g00613 . . . . . Cma01g00998 Cma09g01088 . . . Cpe06g00889 . . . . . . . . . . . . . . . . . . Cone20ag0403 . . . . . . . . . . Bma01g00875 . . Cmo01g01034 Cmo09g01096 . . . Car09g00986 . Cpe02g00897 Bhi09g01488 Tan01g3362 Cmetu01g2220 . . Mch11g1416 . Cla09g00912 Cam09g0964 Cec09g0969 Cco09g0975 . . Cre09g0933 . . Chy03g00637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000873 1 4 2 1 2 2 2 2 2 3 2 2 3 3 4 4 2 6 5 2 4 2 1 3 4 2 2 5 6 6 89