Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1212 ATGCAACCATATTTGCCACCGCTCTCCCAAGTCTCTCTAATTCCTTCCTCAAGCTCCCACAACCCACCAGCTAAGTTGATAGATACTGTGAGTAGATTGAATTGGATTTCAATGGGGTATTCCGGGCTTTTTATCACGAAGGTTGCCAGTTTTGGAAAAAGATTACTGAAGGATCATTTTAAGAGCTGGGTTTTTCAATCTTTGAATGGACTCATTGTGCTTGGATCATTAGTATCCTTTTTTGTGGCTGCCGGGTGTGCGTATCTATATGTGTTTCCCACTTTTCACTCTGTGATTCAGAATTATGGGATTTCCAAGTCCTCCAGTGAATGCAATGTTTTTGAAGGAAGATGGATCCGGGATGAGAGTTACCCTCTATACAATGCATCGGACTGTCCTTTTGCTGAACGTGGATTTAATTGCTTGGCTAATGGGCGGAAAGATCAGGGTTATTTAAAATGGCGGTGGAAACCCAAGAATTGTGAGATTCCGAGGTTTAGAGTGCATGGAGTTCTTGAAAAGCTTCGAGGGAAGCGGGTTGTTTTCATTGGTGATTCGATGAGTAGAACACAGTGGGAATCCCTGATATGTTTGCTTATGACTGGTGTGGAGGATAAGAGGAGTGTTTATGAGATTAATGGGAATAGTATCACGAAACGGATTAGGTATTTGGGTGTGCGGTTTAGCTCGTTTAATTTTAGTGTTGAGTTCTATCGTTCTGTTTTCCTGGTGCAGCCTGGCCTGGCCCCAAAACATGGACCAAAGAGGGCTAAATCATCGCTACATCTGGACAAGATGGATGAAATTAGTAAAGAGTGGATTGACTCTGATATTCTGATTTTTAATACAGGGCACTGGTGGACGCGTTCCAAGCTTTTTGAAATGGGCTGCTACTTCCAGGTGGGTGGGGCACTGAAGCTTGGAATGTCAATTCCAACTGCCTTCAGAACAGCATTAAACACTTGGGCTTCATGGATTGAAACTGCAATCAACACAAACAGAACACGTGTATTCTTTCGTTCTTTTGAATCTTCCCACTGGAGTGGTCGAAGACAACAGTTTTGCAAAGTGACTAGAAACCCCTTGTCAAAACCTAAAGGAAGGGGCCGGAGTCCATTTTCAGACATCATAATGAAGGTGGTGGAGAATATGGCTGTTCCTGCGACAGTTCTGCATGTTACCCCCATGGTGGCATTCCGTAGTGATGCGCACGTTGGTACTAATAGTGACACTCCATTGGTGCCTGATTGTAGCCATTGGTGTCTACCTGGGGTGCCTGATATGTGGAACGAAATTCTCTTATCATACCTACTTTCCAGGAACGAAGTTTCTTTTCAATGA 1341 43.7 MQPYLPPLSQVSLIPSSSSHNPPAKLIDTVSRLNWISMGYSGLFITKVASFGKRLLKDHFKSWVFQSLNGLIVLGSLVSFFVAAGCAYLYVFPTFHSVIQNYGISKSSSECNVFEGRWIRDESYPLYNASDCPFAERGFNCLANGRKDQGYLKWRWKPKNCEIPRFRVHGVLEKLRGKRVVFIGDSMSRTQWESLICLLMTGVEDKRSVYEINGNSITKRIRYLGVRFSSFNFSVEFYRSVFLVQPGLAPKHGPKRAKSSLHLDKMDEISKEWIDSDILIFNTGHWWTRSKLFEMGCYFQVGGALKLGMSIPTAFRTALNTWASWIETAINTNRTRVFFRSFESSHWSGRRQQFCKVTRNPLSKPKGRGRSPFSDIIMKVVENMAVPATVLHVTPMVAFRSDAHVGTNSDTPLVPDCSHWCLPGVPDMWNEILLSYLLSRNEVSFQ* 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13650263 13655312 - Vvi18g1212 Vvi18g1212 780915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1212 446 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 61 438 IPR029962 GO:0016413
Vvi18g1212 446 Pfam PMR5 N terminal Domain 110 162 IPR025846 -
Vvi18g1212 446 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 163 435 IPR026057 GO:0016740
Vvi18g1212 446 PANTHER LEAF SENESCENCE RELATED PROTEIN-LIKE 61 438 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1212 - - - vvi:100252383 871.692
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1281 Vvi18g1212 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1212 . . . . . . . . . . . . Car01g00885 . . . . . . . . . . . . . . . . . . Cone4ag1521 . . . . . . . . . . . . . . . . Cmo01g01032 . . . . . . Cpe02g00898 Bhi09g01514 . . . . . . Cla09g00915 Cam09g0967 Cec09g0972 Cco09g0978 . . Cre09g0936 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010327 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 32