Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g1213 | ATGGCCATTGAGAGCTCGGCAACCGACCGACGTCACCGATTTAATCACTCAGGGACTCGACTGAGTCATGAGTCAATGCGTCACGGTAGAGCTCCGTTCACAACACTACACAGATCCAATTCCCTCTCCTTCCATCACCAATCCAACTTTTCAACAATTCAGCGCCAAGTGAATCAAACTTCAGAGCACAAAATATTTACTCATCTTTTGAAAATTTGCCTACAACAATGCCAGCGAATCAAAATCCGCCACCCGTTCGACGAAACGCCTCAAAGGCTAGCCCAAGCTTCAAGAACCAGCAAAACTATCCACGCCCAGACCCTGAAATTTGGGTTTGGATCAAAAGGGCGGCTGGGTAGTGCCATTGTTGATTTGTATGCTAAATGTGGCAATGTGGAATTTGCTGCGAAGGCATTTAACCAGCTTGAGAAACGAGATATACTGGCATGGAACTCGGTTCTTTCCATGTATTCGAGGCAGGGATCGTTGGAGCAGGTTATTTGGTGTTTTGGGTCATTGCAGAATTGTGGCGTGTCGCCCAATCAGTTCACTTATGCTATTGTTTTGTCCTCTTGTGCAAGATTGGTGGATATTGATCTGGGCAAACAAGTCCATTGTGGTGTTATTAAGATGGGTTTTGAGTTTAATTCCTTTTGTGAAGGGTCTTTAATTGATATGTATTCAAAATGTGGTTCTCTGGTTGATGCTCGGAAAATATTTGATGCAGTGGTGGATCCTGATACAGTTTCCTGGACAGCAATGATTGCAGGGTATGTTCAAGTTGGTTTACCTGAGGAGGCACTTAAGGTGTTTGAGGATATGCAGAAACTAGGCCTTGTTCCAGACCAGGTTGCATTTGTGACTGTCATAACTGCATGTGTTGGTTTGGGAAGGCTTGATGATGCATGTGATTTATTTGTCCAAATGCCCAACACAAATGTTGTAGCATGGAATGTGATGATTTCTGGGCATGTGAAGAGAGGTTGTGATATAGAAGCTATTGATTTTTTCAAAAACATGTGGAAAACTGGTGTTAAGTCGACGCGATCCACATTAGGAAGTGTGTTGAGTGCCATTGCTAGTTTAGAAGCTCTCAACTATGGCCTGCTGGTTCATGCTCAGGCAATCAAACAGGGTTTAAATTCTAATGTTTATGTTGGAAGTTCTTTGATCAATATGTATGCCAAGTGTGAGAAAATGGAAGCTGCCAAGAAAGTTTTTGATGCTTTGGATGAGAGAAATCTTGTGCTATGGAATGCAATGCTAGGAGGTTATGCACAGAATGGGTATGCCAGTAAAGTCATGAAGTTATTCTCTGAAATGAGGGGTTGTGGTTTCTGGCCTGATGAATTTACCTACACTAGCATTCTGAGTGCATGTGCCTGCTTGGAATGTTTAGAAATGGGGCGCCAGTTGCATTCATTTATTATCAAACATAATTTTGAATACAACTTATTTGTGGAAAACACATTAGTAGATATGTATGCTAAATGTGGGGCTCTAGAGGAAGCAAGACAACAATTTGAATTCATAAGGAATAGAGACAATGTTTCTTGGAATGCAATTATTGTTGGGTATGTGCAGGAAGAAGACGAGGATGAGGCTTTCAACATGTTTCGAAGGATGATCTTGGATGGGATTGCACCTGATGAAGTGTCTTTGGCTAGTATACTTAGTGGATGTGCAAATCTTCAAGCTCTTGAACAAGGAGAGCAGGTGCATTGCTTTTTGGTCAAATCTGGTTTACAAACTTGCCTTTATGCAGGAAGCTCCCTTATTGACATGTATGTCAAATGTGGTGCCATTGAAGCCGCTCGATATGTTTTCTCTTGCATGCCTAGCCGAAGTGTTGTCTCCATGAATGCTATTATTGCAGGGTATGCTCAAAATGATCTAGTTGAAGCAATAGATCTGTTCCAAGAGATGCAGAACGAGGGATTGAACCCATCTGAAATCACCTTTGCAAGCCTTTTGGATGCATGTACTGGACCTTATAAATTGAATCTGGGAAGGCAAATCCACTGTCTAATACAAAAGAGGGGCCTTTTGTATGATGGTGATTTCTTAGGCGTCTCTCTCTTGGTCATGTATATGAACTCCCAAAGGAAAACAGATGCAGATATTCTTTTCTCAGAGTTTCAATATCCAAAGAGTACAATCTTATGGACAGCAATAATATCAGGACACACTCAAAATGGTTGCAGCGAGGAGGCTTTGCAGTTGTATCAAGAAATGCATAGAAACAATGCCAGACCGGACCAAGCCACATTTGCTAGTGTCCTTAGAGCATGTTCCATCTTAGCTTCTTTGGGAGATGGTAGAATGATCCATTCTCTCATTTTCCATGTTGGTTTGGACTCAGACGAGTTAACAGGCAGCGCCGTTGTAGACATGTATGCTAAATGTGGGGATATGAAAAGTTCTGTTCAAGTTTTTGAAGAAATGGGTAGTAAAAATGATGTTATCTCTTGGAACTCGATGATAGTTGGATTTGCTAAAAATGGGTATGCAGAAAATGCACTGAAAATCTTTGATGAGATGAAGCACACACGAATAAGGCCTGATGATGTTACATTCCTTGGTGTTCTCACTGCATGTAGTCATGCAGGCAGGGTATCTGAAGGCCGTGAAATCTTTGACATCATGGTCCATTCCTATAAGATTGTGCCAAGATTAGATCATTGCGCTTGTATGATTGATCTTCTGGGCAGATGGGGCTTTCTCAAAGAAGCTGAGGAGTTCATTGACAAGCTAAATTTTGAGCCCAATGCTATGATTTGGGCAACACTACTTGGTGCTTGCAGAATACATGGAGATGATATAAGGGGGCGACGAGCAGCTGAGAAGCTGATTGAATTGGAACCTGAAAATTCTTCTCCTTATGTGCTACTTTCTAATATATATGCTGCATCAGGAAACTGGGATGAGGTTAACTCAGTGAGGAGGGCAATGAGAGAAAAAGGACTGAGAAAGTTGCCTGGATGTAGCTGGATAGTAGTAGGACAGAAGACAAACTTATTTGTAGCAGGGGATAAATTTCATCCCAGTGCTGGTGAAATCCATGCACTTTTGAAGGATTTGATAGCACTAATGAAAGAAGATGGTTATATTGCTGAAACTGATTCTCTGTTGGAAGATGAAGACTGA | 3147 | 41.66 | MAIESSATDRRHRFNHSGTRLSHESMRHGRAPFTTLHRSNSLSFHHQSNFSTIQRQVNQTSEHKIFTHLLKICLQQCQRIKIRHPFDETPQRLAQASRTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDEVNSVRRAMREKGLRKLPGCSWIVVGQKTNLFVAGDKFHPSAGEIHALLKDLIALMKEDGYIAETDSLLEDED* | 1049 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 13662477 | 13665624 | - | Vvi18g1213 | Vvi18g1213 | 780916 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1213 | 1048 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 515 | 549 | IPR002885 | - | |
| Vvi18g1213 | 1048 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 718 | 752 | IPR002885 | - | |
| Vvi18g1213 | 1048 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 247 | 281 | IPR002885 | - | |
| Vvi18g1213 | 1048 | Pfam | PPR repeat | 794 | 818 | IPR002885 | - | |
| Vvi18g1213 | 1048 | Pfam | PPR repeat | 222 | 241 | IPR002885 | - | |
| Vvi18g1213 | 1048 | Pfam | PPR repeat | 315 | 344 | IPR002885 | - | |
| Vvi18g1213 | 1048 | Pfam | PPR repeat | 897 | 917 | IPR002885 | - | |
| Vvi18g1213 | 1048 | Pfam | PPR repeat | 489 | 510 | IPR002885 | - | |
| Vvi18g1213 | 1048 | Gene3D | Tetratricopeptide repeat domain | 47 | 195 | IPR011990 | GO:0005515 | |
| Vvi18g1213 | 1048 | Gene3D | Tetratricopeptide repeat domain | 292 | 364 | IPR011990 | GO:0005515 | |
| Vvi18g1213 | 1048 | Gene3D | Tetratricopeptide repeat domain | 677 | 770 | IPR011990 | GO:0005515 | |
| Vvi18g1213 | 1048 | Gene3D | Tetratricopeptide repeat domain | 196 | 291 | IPR011990 | GO:0005515 | |
| Vvi18g1213 | 1048 | Gene3D | Tetratricopeptide repeat domain | 365 | 464 | IPR011990 | GO:0005515 | |
| Vvi18g1213 | 1048 | Gene3D | Tetratricopeptide repeat domain | 571 | 668 | IPR011990 | GO:0005515 | |
| Vvi18g1213 | 1048 | Gene3D | Tetratricopeptide repeat domain | 465 | 570 | IPR011990 | GO:0005515 | |
| Vvi18g1213 | 1048 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 820 | 854 | IPR002885 | - | |
| Vvi18g1213 | 1048 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 957 | 991 | IPR002885 | - | |
| Vvi18g1213 | 1048 | Pfam | E motif | 941 | 998 | IPR046848 | - | |
| Vvi18g1213 | 1048 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 146 | 180 | IPR002885 | - | |
| Vvi18g1213 | 1048 | PANTHER | OSJNBB0070J16.5 PROTEIN | 689 | 780 | - | - | |
| Vvi18g1213 | 1048 | PANTHER | OSJNBB0070J16.5 PROTEIN | 222 | 295 | - | - | |
| Vvi18g1213 | 1048 | PANTHER | OSJNBB0070J16.5 PROTEIN | 784 | 1045 | - | - | |
| Vvi18g1213 | 1048 | PANTHER | OSJNBB0070J16.5 PROTEIN | 511 | 614 | - | - | |
| Vvi18g1213 | 1048 | PANTHER | OSJNBB0070J16.5 PROTEIN | 110 | 233 | - | - | |
| Vvi18g1213 | 1048 | PANTHER | OSJNBB0070J16.5 PROTEIN | 297 | 514 | - | - | |
| Vvi18g1213 | 1048 | PANTHER | OSJNBB0070J16.5 PROTEIN | 615 | 687 | - | - | |
| Vvi18g1213 | 1048 | Pfam | PPR repeat family | 246 | 293 | IPR002885 | - | |
| Vvi18g1213 | 1048 | Pfam | PPR repeat family | 820 | 867 | IPR002885 | - | |
| Vvi18g1213 | 1048 | Pfam | PPR repeat family | 414 | 461 | IPR002885 | - | |
| Vvi18g1213 | 1048 | Pfam | PPR repeat family | 146 | 194 | IPR002885 | - | |
| Vvi18g1213 | 1048 | Pfam | PPR repeat family | 515 | 563 | IPR002885 | - | |
| Vvi18g1213 | 1048 | Pfam | PPR repeat family | 718 | 764 | IPR002885 | - | |
| Vvi18g1213 | 1048 | Pfam | PPR repeat family | 616 | 661 | IPR002885 | - | |
| Vvi18g1213 | 1048 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 313 | 347 | IPR002885 | - | |
| Vvi18g1213 | 1048 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 616 | 649 | IPR002885 | - | |
| Vvi18g1213 | 1048 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Vvi18g1213 | 1048 | PANTHER | OS07G0578800 PROTEIN-RELATED | 615 | 687 | IPR045215 | GO:0003723|GO:0009451 | |
| Vvi18g1213 | 1048 | PANTHER | OS07G0578800 PROTEIN-RELATED | 511 | 614 | IPR045215 | GO:0003723|GO:0009451 | |
| Vvi18g1213 | 1048 | PANTHER | OS07G0578800 PROTEIN-RELATED | 297 | 514 | IPR045215 | GO:0003723|GO:0009451 | |
| Vvi18g1213 | 1048 | PANTHER | OS07G0578800 PROTEIN-RELATED | 689 | 780 | IPR045215 | GO:0003723|GO:0009451 | |
| Vvi18g1213 | 1048 | PANTHER | OS07G0578800 PROTEIN-RELATED | 222 | 295 | IPR045215 | GO:0003723|GO:0009451 | |
| Vvi18g1213 | 1048 | PANTHER | OS07G0578800 PROTEIN-RELATED | 784 | 1045 | IPR045215 | GO:0003723|GO:0009451 | |
| Vvi18g1213 | 1048 | PANTHER | OS07G0578800 PROTEIN-RELATED | 110 | 233 | IPR045215 | GO:0003723|GO:0009451 | |
| Vvi18g1213 | 1048 | TIGRFAM | PPR: pentatricopeptide repeat domain | 416 | 449 | IPR002885 | - | |
| Vvi18g1213 | 1048 | TIGRFAM | PPR: pentatricopeptide repeat domain | 822 | 855 | IPR002885 | - | |
| Vvi18g1213 | 1048 | TIGRFAM | PPR: pentatricopeptide repeat domain | 721 | 753 | IPR002885 | - | |
| Vvi18g1213 | 1048 | TIGRFAM | PPR: pentatricopeptide repeat domain | 249 | 282 | IPR002885 | - | |
| Vvi18g1213 | 1048 | TIGRFAM | PPR: pentatricopeptide repeat domain | 517 | 551 | IPR002885 | - | |
| Vvi18g1213 | 1048 | TIGRFAM | PPR: pentatricopeptide repeat domain | 315 | 346 | IPR002885 | - | |
| Vvi18g1213 | 1048 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 414 | 448 | IPR002885 | - | |
| Vvi18g1213 | 1048 | Gene3D | Tetratricopeptide repeat domain | 837 | 1009 | IPR011990 | GO:0005515 |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g1213 | - | - | - | vvi:100257512 | 2111.65 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi18g1213 | . | Blo12g01108 | . | Bda03g00030 | . | Bpe04g00020 | Bma04g00028 | . | . | Cmo12g00334 | . | Cma09g01089 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cmo09g01097 | . | . | . | Car09g00987 | . | . | Bhi09g01512 | . | . | . | . | . | . | Cla09g00917 | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0011120 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 3 | 1 | 0 | 1 | 0 | 1 | 27 |