Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1217 ATGGGATCCGTAGTAGGTGAGAAAATTACCCGTTTGATCGAATATGCCACCAATGAATTTCTACCTCTTATTCTAGTGCGTTCTTTCGGAGGAGCACATATGCAAGAAGGAATTTTGGTATGTTGGGAGATATCATTATTGCCAAACCCAATTTCTTACATTGCATTTGCGGGTAAAAGGGTAGTTGAACAAACATTGAAAAAGACAATACCTGAAGGTTCACAAGTGGCTGAATATTTATTCCATAAGGGCTTATTCGATCCAATCGTACCACGTAATACTTTAAAGGGTGTTCTGAGTGGGTTATTTCAGCTTCACGCTTTCTTTCCTTTGAATAAAAAAAAAAAATCAAGTATTTCTTTACGAGAGTTCACAATGAGTGGAAGCGTCAGGAAACGCAAATCTAAATGGGACTTGAAAGAAGAGAGTCAGTTTGCTAAAATCAGTTCAAACAATGTAAAGGCAGGTGATTCCAATCTAGATGATTGGTCTGATTTGGAAGCCAACGATGGGTTAAAATCTAATGATAACTTTGAATTGGACTCTTGGGAACCCTTGTCTGGTAATGGTGGTGCCCAGAAGGATGTTCGTGACAATAGAGAATTCAATGAGGTTTCAGAAACCATGCGGGGGTGGGTTGCAGATAACAGCTACAGCATGAGGACATCTCCTAGTTTTGATGGACGGGTACAAAAAAGATATGGCCGCTCCCCAAGAAACAATTGGAGACAGTCAAACAGGGGTCGAAGCAGAAGCAGAAGCAGGAGCCGGGGCCGGAGCAAGACCTTGGGTAGAAGTGTGAGTAGCAGCCGAAGTTGGAGCAGGAGCCGGAGCCGGAGCCGGAGCCGGAGTCTGAGTCGGAGCCCACATGTTGACTTTAAACGGGATTCGTATGGATTTAGTGAAAGAAGTAGAAATGGATCTGGAGTGTCATCTCAACGATGTCGAGATTTTGTTGCAGGGAGGTGCAGTAGAGGCAGTCAATGCAGGTTTCTTCATCAGGATAACCTCAATTACAGGGATGGTGGCCGCTCAGAAATTGACCAAGCAGAAAGCTGGGAAAGCAGACAGGAACACAGGAGAGCTTCAAGGTATGCTGATGCTGAAGGGCCTATAGATTACCCACGGGATAAGGTTGCTCGTGGTGGGTATGGGAATCAGTATGATGGGGAAAAGGATGTTCCTGTGAGGAACAACAGCAGATCTAATGTTCGTTGTAATGACTTTCTGAAAGGTAAGTGTCATAGGGGATCTTCATGCAAATTTTCCCATCATGGTGCTTCTGGTGATAGATATGATAGACATGATAGGGATCATGAGCGTAAGCGTGAACCACACAGAGTTGGTGGCATCCTGTGCAAGTATTTTGCAATGGGAAAATGCTTTAATGGTGATCGTTGCAGGTTTTCTCATGATGATCCACCTTGTGACAGTCCTGAAGGCAGGCCACGGGATGGTAAATGGGGTCATAATTTGGATGATGAGAACAAACCATGGGAGGATACAAAATGGAATGGTGCAGCTGCCTTAGACATTGCAAAGTCCTCTGAGTGGGGTAGCAATGATAATGGAAACAAGAATTTTACAGATTCAATGGTTGCAGACAAATCTATTGGTAATAGCTGGGGTCAGAGTTTGGATAATGAAAATAAACCATGGGCCACTTCAGCATCTAAAGACAAAGCTTCTGAGGGAGATTCATGGGGATCCTCTCATTGGAGAGCTAGAAGTAATATTGCAAACACGGGCATTCCAGAATTAATGAGTAGTGCTAAATTGTCTGTTAAAGAAGAGCCTCTTCTTACTCCCCTTGGTTCACAAGCACAAACCCTGAATGGAATCTCCAGGCCTGCTCATGAACAGAATATAATGCAAGATACTTCAAGCCTGCAGCTTGCAACTTCTTTTATGCGTCCAACAGTATCTGGAGATTCTTATGTTCAGCAGCATCTTGGTAAGAGTGGGGATAATACTGCAATGGTAGACGGTTCCTCACATGACAGGGTAAATTTCTCTGTACATACACTTCATGTGCCTCGACAAAGCTTCAATAAAGATGGTGATAATTTAGGTTCTCAACCTCCTTTGAGTTTTAACGAAACTAGTCAAAGCCAACATATGTGCAATTTAAATCCCTTAAATGGACATACAATCGACTTGAATGGACCAGTGGAACGGATAAACTCTCCTTTGAATCTGCAAAGCCAGACTCAGTTTTGTCAGGGGGAATCTGTTGAGACACCAGAAATGATGGAATGCAAAGTGCCTCAAGTAATCTCTGGAACCCCTAGGAATTTTATTACCAATAATCCAGTTGGTCAAATGTCTAGTCTTTCAGAATCTTTGGCTCAGGTATTTGGAAATGGGCAGCAACTTCTTCAGCCATATGCTGTGCTGAACACCCCCAATTCTATGGATTTGGTCCAACCCCATGGGTATTCGTTAAATCCCAGTGAGCAGAAAACTCTTGTGCCGTCAAAAGGTTTCTCTCTATCAATGATGTCTGCTAGTGCTGGGACCAATTCTGCCGAAATGATCAAGATTGGCAATTCCGAGGATGAACATTGCAAGAGTCCAAAGATGAAGCAACAGGAGCCAGTTGCTAATTCAGAAGTGAAGGGAAATATCAAAGAAGTGGCTGAAGAATGCAGGCAAGAGCTAGAAAAGGGTCATCCAGAGAATCTAGATGCAGATGGTGGGGTTGATGAGGGCAATAGAATCAAGGATGAGAAGGGGATGCGGATCTTCAAAAATGCACTGGTGGAGTTTGTGAAGGAGATTCTAAAGCCCACCTGGAAGGAAGGGCAGATGAGCAGGGAGGTTCACAAAACCATAGTGAAGAAAGTGGTGGATAAAGTGACTGGTACTATTCAAGGAGAGCATGTCCCAAAGACACAAGAAAAAATTGACCAGTATCTATCATATTCTAAACCCAAGCTTACCAAACTTGTACAGGCATATGTGGAGAAATTTCTGAAGAGTTAG 2985 43.28 MGSVVGEKITRLIEYATNEFLPLILVRSFGGAHMQEGILVCWEISLLPNPISYIAFAGKRVVEQTLKKTIPEGSQVAEYLFHKGLFDPIVPRNTLKGVLSGLFQLHAFFPLNKKKKSSISLREFTMSGSVRKRKSKWDLKEESQFAKISSNNVKAGDSNLDDWSDLEANDGLKSNDNFELDSWEPLSGNGGAQKDVRDNREFNEVSETMRGWVADNSYSMRTSPSFDGRVQKRYGRSPRNNWRQSNRGRSRSRSRSRGRSKTLGRSVSSSRSWSRSRSRSRSRSLSRSPHVDFKRDSYGFSERSRNGSGVSSQRCRDFVAGRCSRGSQCRFLHQDNLNYRDGGRSEIDQAESWESRQEHRRASRYADAEGPIDYPRDKVARGGYGNQYDGEKDVPVRNNSRSNVRCNDFLKGKCHRGSSCKFSHHGASGDRYDRHDRDHERKREPHRVGGILCKYFAMGKCFNGDRCRFSHDDPPCDSPEGRPRDGKWGHNLDDENKPWEDTKWNGAAALDIAKSSEWGSNDNGNKNFTDSMVADKSIGNSWGQSLDNENKPWATSASKDKASEGDSWGSSHWRARSNIANTGIPELMSSAKLSVKEEPLLTPLGSQAQTLNGISRPAHEQNIMQDTSSLQLATSFMRPTVSGDSYVQQHLGKSGDNTAMVDGSSHDRVNFSVHTLHVPRQSFNKDGDNLGSQPPLSFNETSQSQHMCNLNPLNGHTIDLNGPVERINSPLNLQSQTQFCQGESVETPEMMECKVPQVISGTPRNFITNNPVGQMSSLSESLAQVFGNGQQLLQPYAVLNTPNSMDLVQPHGYSLNPSEQKTLVPSKGFSLSMMSASAGTNSAEMIKIGNSEDEHCKSPKMKQQEPVANSEVKGNIKEVAEECRQELEKGHPENLDADGGVDEGNRIKDEKGMRIFKNALVEFVKEILKPTWKEGQMSREVHKTIVKKVVDKVTGTIQGEHVPKTQEKIDQYLSYSKPKLTKLVQAYVEKFLKS* 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13682338 13692522 - Vvi18g1217 Vvi18g1217 780920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1217 994 Gene3D - 301 366 - -
Vvi18g1217 994 Gene3D - 1 45 - -
Vvi18g1217 994 MobiDBLite consensus disorder prediction 217 312 - -
Vvi18g1217 994 Pfam CCCH-type zinc finger 452 472 IPR041367 -
Vvi18g1217 994 MobiDBLite consensus disorder prediction 179 202 - -
Vvi18g1217 994 MobiDBLite consensus disorder prediction 348 397 - -
Vvi18g1217 994 MobiDBLite consensus disorder prediction 539 571 - -
Vvi18g1217 994 SUPERFAMILY CCCH zinc finger 450 472 IPR036855 GO:0046872
Vvi18g1217 994 SUPERFAMILY ClpP/crotonase 1 106 IPR029045 -
Vvi18g1217 994 SMART c3hfinal6 311 335 IPR000571 GO:0046872
Vvi18g1217 994 SMART c3hfinal6 401 426 IPR000571 GO:0046872
Vvi18g1217 994 SMART c3hfinal6 447 473 IPR000571 GO:0046872
Vvi18g1217 994 ProSiteProfiles Zinc finger C3H1-type profile. 447 474 IPR000571 GO:0046872
Vvi18g1217 994 Gene3D - 399 475 - -
Vvi18g1217 994 ProSiteProfiles Acetyl-coenzyme A (CoA) carboxyltransferase N-terminal domain profile. 1 121 IPR011762 -
Vvi18g1217 994 MobiDBLite consensus disorder prediction 261 275 - -
Vvi18g1217 994 MobiDBLite consensus disorder prediction 472 501 - -
Vvi18g1217 994 Pfam RNA-binding, Nab2-type zinc finger 315 333 - -
Vvi18g1217 994 MobiDBLite consensus disorder prediction 285 301 - -
Vvi18g1217 994 MobiDBLite consensus disorder prediction 246 260 - -
Vvi18g1217 994 MobiDBLite consensus disorder prediction 420 443 - -
Vvi18g1217 994 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 126 260 - -
Vvi18g1217 994 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 265 820 - -
Vvi18g1217 994 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 809 992 - -
Vvi18g1217 994 ProSiteProfiles Zinc finger C3H1-type profile. 309 336 IPR000571 GO:0046872
Vvi18g1217 994 MobiDBLite consensus disorder prediction 426 443 - -
Vvi18g1217 994 ProSiteProfiles Zinc finger C3H1-type profile. 400 427 IPR000571 GO:0046872
Vvi18g1217 994 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 809 992 - -
Vvi18g1217 994 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 126 260 - -
Vvi18g1217 994 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 265 820 - -
Vvi18g1217 994 MobiDBLite consensus disorder prediction 348 376 - -
Vvi18g1217 994 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 405 424 IPR000571 GO:0046872
Vvi18g1217 994 Gene3D - 46 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1217 - - - vvi:100267803 1654.8
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01440 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002735 2 10 1 1 1 1 4 1 1 1 1 1 2 1 1 4 1 2 2 1 1 2 1 1 1 1 1 7 2 1 57
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14274 PF18044 zf-CCCH_4 1.30E-07 CL0537 Vvi TF