Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1221 ATGGGGAATGATTTTGTGATTACCATTCTTGTCAGGCTGCTGCTAGTACATGGTTTTACGACCATGTCATGCTCTGTGATTTGTTCCAGCGCCACAAACCCTACTGATCAAGAGGCTTTGCTCGCCTTTAAATCCCAGATCACCTTCAAATCCGATGACCCATTGGTTAGTAACTGGACCACAGAGGCCTCCTTCTGTACCTGGGTTGGGGTCTCTTGCAGTTCTCATCGGCAAAGAGTCACTGCCTTGAATCTTTCTTTCATGGGTTTTCAAGGCACTATATCACCATGCATCGGGAACCTCTCCTTTCTCACAGTTCTGGACCTCAGCAACAACAGTATTCATGGTCAGCTTCCAGAGACTGTAGGTCATCTGCGCCGTTTAAGAGTCATCAACTTGAGATCCAACAACCTGGAGGGAAAAATTCCATCAAGCTTGTCACAGTGTCGAAGGCTTCAATGGCTGCTCCTCCGCTCAAACCGATTCCAAGGGAACATCCCCAAGGAGATAGCCCATCTCTCCCATCTGGAAGAACTAGACTTAACAATGAACAGACTAACAGGCACCATTCCACTGTCCTTAGGTAATCTTTCCAGGTTGGAAATCCTTGATTTCATGTATAACTATTTGGACGGTGGGATCCCTCAACAACTGACCAGCCTTGGCCTTCCAAAGCTTAATGAGCTCAACCTGCGAGACAATCGACTCAATGGTAAAATCCCAAATTCTATCTCGAATGCTTCGAGGCTCACTTTCTTAGAGCTATCAAACAATCTCTTAAATGGCCCAGTTCCCATGAGTTTGGGCAGTTTACGATTCCTTCGGACGCTCAATTTGCAGCGAAATCAACTCAGCAACGACCCATCTGAGAGGGAACTCCATTTCTTATCATCTTTGACAGGGTGTAGAGATTTGATCAATTTGGTTATTGGGAAGAATCCCATAAATGGAGTACTACCAAAATCTATTGGAAATCTATCGAGCTCACTAGAACTCTTCAGTGCAGATGCAACCCAGATCAAAGGCAGCCTTCCAATCAAAATGGGTAACTTGAGCAACTTGCTGGCACTCGAACTAGCTGGCAATGACTTGATTGGGACCTTGCCGTCTTCTCTTGGAAGCTTAAGTCGACTTCAGAGATTGCTAATCTCCCTATCTTCTAATGCGCTGAAATCAATACCTCCGGGCATGTGGAACCTCAACAATCTTTGGTTTCTCAATCTGTCCCTTAATTCTATAACTGGGTATCTTCCTCCACAGATTGAAAATCTGAAGATGGCAGAAACATTTGATCTATCCAAGAACCAACTATCTGGAAACATTCCCGGCAAAATATCAAATCTGAAGATGTTAAGGCGTCTCAACTTGTCTGACAATGCATTCCAAGGTAGTATTCCTGATGGTATCAGTGAGTTGGCTAGCTTAGAATCTTTGGATCTCTCTTCCAACAAACTATCAGGCATCATTCCAGAGTCGATGGAGAAGCTTCGCTATCTCAAATATCTGAATCTTTCTCTCAACATGCTAAGTGGCAAAGTTCCAACTGGAGGCCCCTTTGGAAACTTCACTGATCGATCTTTCGTGGGGAACGGTGAACTGTGTGGTGTTTCGAAACTCAAACTCCGAGCTTGCCCAACAGATTCTGGCCCGAAATCTAGGAAGGTAACATTTTGGCTCAAATATGTCGGCCTTCCCATTGCTTCAGTAGTAGTATTGGTTGCTTTCCTGATTATCATTATAAAGCGTCGAGGGAAGAAGAAGCAGGAAGCCCCCTCTTGGGTTCAATTCTCAGATGGTGTAGCGCCCAGATTGATTCCATATCATGAGCTCCTTTCTGCTACCAACAACTTTTGTGAAGCAAACCTGCTTGGAGTTGGGAGTTTTGGGTCTGTATACAAAGGAACTCTCTCAGACAATACAATTGCTGCCGTGAAAATTTTGGATTTGCAGGTGGAGGGGGCATTGAAATCTTTCGACGCGGAATGTGAAGTTCTGAGGAATGTTAGACATAGAAATCTCGTAAAAATCATAAGCTCTTGCAGTAATCTTGATTTTAGAGCTTTGGTTCTTCAGTACATGCCTAATGGGAGCCTAGAGAGGATGCTGTATTCTTACAACTACTTCTTAGATCTCACCCAGAGGCTCAACATCATGATAGACGTGGCAACAGCAGTTGAGTATCTTCACCATGGTTATTCAGAGACTGTAGTGCACTGCGATTTGAAGCCAAGCAATGTCCTTCTCGACGAAGAAATGGTCGCACATTTACGAATAGTATCAAATCAATCCCCCATCATATCCCCGTCCCAAAGATTGGAAGCGTGGTTACAATTCTTGCCTTTTGATTTGTGCAAAACAGAGTATGGTTCTGAAGGAAGAGTGTCAACGAAGGGAGATGTCTATAGCTACGGTATCATGCTGATGGAAACATTCACCAGAAAGAAACCAACTCATGAAATGTTTGTAGGAGGATTAAGCTTGAGGCAATGGGTGGATTCTTCTTTTCCTGATCTGATAATGGAGGTTGTCGATGCTAACCTGTTGGCACGAGACCAAAATAACACAAATGGGAATCTCCAAACTTGTCTCCTTTCCATAATGGGTTTGGGCTTGCAGTGTTCCTTGGATTCACCGGAGCAAAGGCTCGATATGAAAGAAGTTGTGGTTAGACTATCAAAGATCAGACAACAGTATATCAGCCAGACGTAA 2709 44.04 MGNDFVITILVRLLLVHGFTTMSCSVICSSATNPTDQEALLAFKSQITFKSDDPLVSNWTTEASFCTWVGVSCSSHRQRVTALNLSFMGFQGTISPCIGNLSFLTVLDLSNNSIHGQLPETVGHLRRLRVINLRSNNLEGKIPSSLSQCRRLQWLLLRSNRFQGNIPKEIAHLSHLEELDLTMNRLTGTIPLSLGNLSRLEILDFMYNYLDGGIPQQLTSLGLPKLNELNLRDNRLNGKIPNSISNASRLTFLELSNNLLNGPVPMSLGSLRFLRTLNLQRNQLSNDPSERELHFLSSLTGCRDLINLVIGKNPINGVLPKSIGNLSSSLELFSADATQIKGSLPIKMGNLSNLLALELAGNDLIGTLPSSLGSLSRLQRLLISLSSNALKSIPPGMWNLNNLWFLNLSLNSITGYLPPQIENLKMAETFDLSKNQLSGNIPGKISNLKMLRRLNLSDNAFQGSIPDGISELASLESLDLSSNKLSGIIPESMEKLRYLKYLNLSLNMLSGKVPTGGPFGNFTDRSFVGNGELCGVSKLKLRACPTDSGPKSRKVTFWLKYVGLPIASVVVLVAFLIIIIKRRGKKKQEAPSWVQFSDGVAPRLIPYHELLSATNNFCEANLLGVGSFGSVYKGTLSDNTIAAVKILDLQVEGALKSFDAECEVLRNVRHRNLVKIISSCSNLDFRALVLQYMPNGSLERMLYSYNYFLDLTQRLNIMIDVATAVEYLHHGYSETVVHCDLKPSNVLLDEEMVAHLRIVSNQSPIISPSQRLEAWLQFLPFDLCKTEYGSEGRVSTKGDVYSYGIMLMETFTRKKPTHEMFVGGLSLRQWVDSSFPDLIMEVVDANLLARDQNNTNGNLQTCLLSIMGLGLQCSLDSPEQRLDMKEVVVRLSKIRQQYISQT* 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13735970 13739523 - Vvi18g1221 Vvi18g1221 780924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1221 902 SMART LRR_typ_2 223 247 IPR003591 -
Vvi18g1221 902 SMART LRR_typ_2 472 495 IPR003591 -
Vvi18g1221 902 SMART LRR_typ_2 101 124 IPR003591 -
Vvi18g1221 902 SMART LRR_typ_2 271 294 IPR003591 -
Vvi18g1221 902 SMART LRR_typ_2 375 400 IPR003591 -
Vvi18g1221 902 SMART LRR_typ_2 173 197 IPR003591 -
Vvi18g1221 902 SMART LRR_typ_2 448 471 IPR003591 -
Vvi18g1221 902 SMART LRR_typ_2 125 149 IPR003591 -
Vvi18g1221 902 Gene3D Ribonuclease Inhibitor 33 189 IPR032675 -
Vvi18g1221 902 ProSiteProfiles Leucine-rich repeat profile. 474 495 IPR001611 GO:0005515
Vvi18g1221 902 SUPERFAMILY Protein kinase-like (PK-like) 594 891 IPR011009 -
Vvi18g1221 902 Gene3D Ribonuclease Inhibitor 190 291 IPR032675 -
Vvi18g1221 902 Gene3D Ribonuclease Inhibitor 292 551 IPR032675 -
Vvi18g1221 902 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 150 383 - -
Vvi18g1221 902 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 383 900 - -
Vvi18g1221 902 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 151 - -
Vvi18g1221 902 Pfam Protein tyrosine and serine/threonine kinase 622 890 IPR001245 GO:0004672|GO:0006468
Vvi18g1221 902 SUPERFAMILY L domain-like 31 298 - -
Vvi18g1221 902 SMART serkin_6 617 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1221 902 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 6 151 - -
Vvi18g1221 902 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 383 900 - -
Vvi18g1221 902 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 150 383 - -
Vvi18g1221 902 ProSitePatterns Protein kinases ATP-binding region signature. 623 645 IPR017441 GO:0005524
Vvi18g1221 902 ProSiteProfiles Leucine-rich repeat profile. 273 294 IPR001611 GO:0005515
Vvi18g1221 902 PRINTS Leucine-rich repeat signature 104 117 - -
Vvi18g1221 902 PRINTS Leucine-rich repeat signature 472 485 - -
Vvi18g1221 902 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Vvi18g1221 902 Gene3D Transferase(Phosphotransferase) domain 1 693 902 - -
Vvi18g1221 902 ProSitePatterns Serine/Threonine protein kinases active-site signature. 736 748 IPR008271 GO:0004672|GO:0006468
Vvi18g1221 902 Pfam Leucine Rich repeat 172 188 IPR001611 GO:0005515
Vvi18g1221 902 Pfam Leucine rich repeat 451 509 IPR001611 GO:0005515
Vvi18g1221 902 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515
Vvi18g1221 902 Pfam Leucine Rich Repeat 225 246 IPR001611 GO:0005515
Vvi18g1221 902 Gene3D Phosphorylase Kinase; domain 1 594 692 - -
Vvi18g1221 902 SUPERFAMILY RNI-like 222 512 - -
Vvi18g1221 902 ProSiteProfiles Protein kinase domain profile. 617 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1221 - - K13420 zju:107416092 743.806
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1221 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76341 PF07714 PK_Tyr_Ser-Thr 1.70E-30 CL0016 Vvi PK