Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1224 ATGGCATCTTCGGTTGTTGAGGGTGATAAGTACCGTTCCTACTTGAGTGGGGACGATGAGAAGAATACTGAATGGAGATATGGTGCTCCTCCTAACTATGATGTTGTGAACAAACTCTTTGAAGAGGGCAGAACTAAGATATGGCCTGCTGGGTCACTGGAAGAAAAAGTGCAGAATCTTGTGAAGACATGGGAAATGGAGATTTTCCATAAGACCAACCCGAATGAATACAAATCACTTGATCCCAAGAAGTATACTTTCAGCCTTAATGGAAGGAAACCGATAAATTTCGGGCAACTCCGCCAACTTGGAGGGGGCTATAATCCATTGATGCTGACCTCCTTGCCTGAGAAGCTCCGGGTCTATAACCCAGCCGATGAAACCGCACAGACATCTCACCTGGCCTTCACCACCGCCTTCCCCCGAGGTTTTGCACTGGAGATTCTCCATGTTTATACAGGGCCACCAGTGATTGTGTACAAATTTAGGCACTGGGGCTTCGTGGAGGGTCCTTTTAAAGGACATGCACCCACTGGAGAAATGGTAGAATTCTTTGGGATGGCAGTCTTTGAGTTAGATGAACATATGAAAATTGTGAAGGTGGAGTTCTTTTACGACCGTGGGGAACTGCTTGGAGGTCTTCTAAAGGGTACTGCCATGGATGGTCCTGCCATTGAGGCATCTTCAAGCTGCCCTGTCCTGAGGAGCACAGGGTAG 717 47.56 MASSVVEGDKYRSYLSGDDEKNTEWRYGAPPNYDVVNKLFEEGRTKIWPAGSLEEKVQNLVKTWEMEIFHKTNPNEYKSLDPKKYTFSLNGRKPINFGQLRQLGGGYNPLMLTSLPEKLRVYNPADETAQTSHLAFTTAFPRGFALEILHVYTGPPVIVYKFRHWGFVEGPFKGHAPTGEMVEFFGMAVFELDEHMKIVKVEFFYDRGELLGGLLKGTAMDGPAIEASSSCPVLRSTG* 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13805367 13806761 + Vvi18g1224 Vvi18g1224 780927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1224 238 PANTHER PATHOGEN-RELATED PROTEIN-LIKE 1 238 - -
Vvi18g1224 238 Gene3D - 108 215 - -
Vvi18g1224 238 PANTHER PATHOGENESIS-RELATED FAMILY PROTEIN 1 238 - -
Vvi18g1224 238 SUPERFAMILY NTF2-like 132 211 IPR032710 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1224 - - - vvi:100254084 496.508
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1224 . . . . . Bpe04g00021 . . . . . . . . Sed03g0461 . Cpe13g00666 Bhi04g01811 Tan11g1182 Cmetu01g0419 . Hepe02g2772 . Lcy10g1320 Cla08g00666 Cam08g1097 Cec08g0682 Cco08g0791 Clacu08g0803 . Cre08g0607 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00527 . Chy03g00591 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002742 0 2 0 0 1 2 2 2 1 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 3 2 2 2 2 3 53