Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1230 ATGTCAAGCAATGCAATCACTATTTTTCTCTTGTTCCTCAACATCTCTCTGTTCCCAGCCATCTGTGCACTGAACCAGGAAGGCCTCTCTCTGCTTTCATGGCTTTCAACCTTCAATACTTCTTCCTCTGCCGCTTTCTTCTCTTCATGGAATCCAAACCACCAGAATCCATGCAAATGGGACTATATCAAATGTTCCAGTGCTGGTTTTGTTTCAGAAATTACAATTAGCTCCATTGATTTTCATACTACTTTTCCCACTCAGATCCTCTCCTTCAACTTTCTCACCACTCTTGTCATCTCAGATGGGAATCTCACCGGAGAAATTCCACCTTCCATTGGGAACTTGTCATCACTGATTGTCCTGGACCTTAGTTTCAATGCTTTGACAGGAAAAATTCCGCCTGCAATCGGAAAATTATCTGAACTGCAGCTATTATTGCTGAATTCAAATTCCATTGTCGGAGAAATTCCAAGGGAAATTGGAAACTGTTCCAAGCTTCGACAGCTTGAACTGTTTGATAATCAGCTATCCGGAAAAATTCCAATGTCTTTTGCAAATTTAGGTGCATTAGAGGAGCTTCTTCTGTCTGATAACAACATTTCTGGCAAAATACCACCATTTATCGGCAGCTTTTCCAGGATGAAGCAGCTTGAATTGGATAACAACCTGCTTTCTGGGGAGATTCCAGCCACCATTGGACAACTAAAGGAGCTCTCTCTGTTCTTTGCTTGGCAGAATCAGCTCAGTGGAAGCATACCGATTGAGCTGGCCAATTGCGAGAAACTTCAAGACTTGGATCTTTCACACAATTTCCTTTCTGGGTCAGTTCCCAATTCTCTCTTCAACCTCAAGAATTTAACCAAGTTGTTGCTGATATCAAACGGATTATCAGGTGAAATTCCACCTGATATTGGCAACTGCACCAGTTTGATCCGTTTACGCCTGGGATCAAACAAGTTCACTGGTCAAATCCCACCAGAAATTGGCCTCTTAAGCAATTTGAGTTTCCTTGAATTGTCAGAAAATCAATTCACTGGAGAAATCCCCCCAGATATTGGCAACTGCACTCAGCTTGAAATGGTCGATTTGCATGGAAATCGGCTCCAAGGCACCATCCCCACTTCTTTCCAGTTTCTTGTCAGTCTCAATGTCTTAGACCTTTCCATGAACAGGATGTCTGGTTCTGTTCCAGAGAACTTGGGCAGGCTTACCTCCTTGAACAAACTTATATTGAATGAAAACTACATTACTGGGCCGATTCCAAATTCACTTGGCCTCTGCAAGGACTTGCAGTTCTTGGATATGAGCAGCAACAGAATCACTGGTTCTATCCCAGAGGAGATTGGTCGCTTACAAGGACTAGACATCCTATTGAACTTGAGTAGGAATTCTCTTTCAGGACCCGTTCCAGAAAGCTTTTCCAATCTTTCCAACCTCGCAAACTTGGACCTCTCTCACAACATGTTGACAGGAAGCCTGAGAGTCTTGGGTAATCTTGACAACCTTGTTTCTCTGAATGTCTCATACAATAATTTCTCAGGTTCTATTCCAGATACCAAATTCTTCCAAGATCTCCCAGCCACTGTTTTCTCTGGCAATCAAAAGCTCTGCGTTAACAAGAATGGTTGCCACTCAAGTGGAAGCCTCGATGGCAGGATATCTAATAGAAATCTTATCATCTGTGTTGTTCTCGGGGTAACTCTGACAATAATGATCATGTGTGCTGTGGTAATATTTCTTCTCCGAACTCATGGAGCTGAATTTGGGAGCAGTAGCGATGAAGAAAACAGCTTAGAGTGGGATTTCACGCCATTCCAAAAGCTGAACTTCTCCGTAAATGATATCGTGAATAAATTGTCAGATTCCAACGTAGTTGGAAAGGGCTGTTCAGGCATGGTCTATCGTGTTGAGACTCCAATGAAACAGGTGATAGCAGTGAAGAAGCTATGGCCAAAGAAGAGTGATGAGCTACCTGAGAGAGACCTGTTTTCTGCAGAAGTTACAACACTAGGATCGATAAGGCACAAAAATATAGTGAGGCTTCTGGGTTGTTGTGACAATGGAAGAACTAGACTGTTGTTGTTTGATTATATTAGTAATGGGAGCTTTTCTGGATTGCTTCACGAGAAGAGAGTGTTCTTGGACTGGGATGCAAGGTACAAGATCATCTTGGGAGCAGCTCATGGTTTGACTTATCTTCACCATGATTGTATTCCTCCAATTGTTCATCGCGACATCAAGGCCAACAATATCTTAGTAGGACCACAATTTGAAGCTTTTCTAGCAGATTTTGGACTTGCAAAGCTGGTTGGTTCTTCAGATTCCTCAGAAGCTTCCAACACAGTTGCAGGCTCTTATGGGTATATTGCTCCTGAATATGGATACAGTTTGAGGATCACAGAGAAGAGTGATGTATACAGCTATGGTATTGTGCTCCTAGAGGCATTAACAGGGATGGAACCAACTGATCACCAGATTCCAGAGGGTGCCCATATTGTTACTTGGATCAACAAGGAACTCCGAGAGAGAAGAAGAGAATTCACATCAATTCTTGATCAGCAACTACTGATAATGTCTGGTACACAGACCCAAGAAATGCTTCAAGTGCTTGGGGTGGCTCTCCTCTGTGTGAACCCCAACCCAGAGGAACGACCCTCCATGAAAGATGTGACAGCAATGCTAAAAGAGATCAGACAAGAAAATGAGGATTACGAAAAGCCAAATTTTCTTGGCAAGGGAGTTCCTATCAACCCAAAAGCAACAGTTGACTGCTCTAGTTTCTCTAAATCATCTGAACCTCTAATTAGATCACCTACCTCATTGCCATAG 2832 42.69 MSSNAITIFLLFLNISLFPAICALNQEGLSLLSWLSTFNTSSSAAFFSSWNPNHQNPCKWDYIKCSSAGFVSEITISSIDFHTTFPTQILSFNFLTTLVISDGNLTGEIPPSIGNLSSLIVLDLSFNALTGKIPPAIGKLSELQLLLLNSNSIVGEIPREIGNCSKLRQLELFDNQLSGKIPMSFANLGALEELLLSDNNISGKIPPFIGSFSRMKQLELDNNLLSGEIPATIGQLKELSLFFAWQNQLSGSIPIELANCEKLQDLDLSHNFLSGSVPNSLFNLKNLTKLLLISNGLSGEIPPDIGNCTSLIRLRLGSNKFTGQIPPEIGLLSNLSFLELSENQFTGEIPPDIGNCTQLEMVDLHGNRLQGTIPTSFQFLVSLNVLDLSMNRMSGSVPENLGRLTSLNKLILNENYITGPIPNSLGLCKDLQFLDMSSNRITGSIPEEIGRLQGLDILLNLSRNSLSGPVPESFSNLSNLANLDLSHNMLTGSLRVLGNLDNLVSLNVSYNNFSGSIPDTKFFQDLPATVFSGNQKLCVNKNGCHSSGSLDGRISNRNLIICVVLGVTLTIMIMCAVVIFLLRTHGAEFGSSSDEENSLEWDFTPFQKLNFSVNDIVNKLSDSNVVGKGCSGMVYRVETPMKQVIAVKKLWPKKSDELPERDLFSAEVTTLGSIRHKNIVRLLGCCDNGRTRLLLFDYISNGSFSGLLHEKRVFLDWDARYKIILGAAHGLTYLHHDCIPPIVHRDIKANNILVGPQFEAFLADFGLAKLVGSSDSSEASNTVAGSYGYIAPEYGYSLRITEKSDVYSYGIVLLEALTGMEPTDHQIPEGAHIVTWINKELRERRREFTSILDQQLLIMSGTQTQEMLQVLGVALLCVNPNPEERPSMKDVTAMLKEIRQENEDYEKPNFLGKGVPINPKATVDCSSFSKSSEPLIRSPTSLP* 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13856922 13860657 - Vvi18g1230 Vvi18g1230 780933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1230 943 PRINTS Leucine-rich repeat signature 263 276 - -
Vvi18g1230 943 PRINTS Leucine-rich repeat signature 477 490 - -
Vvi18g1230 943 SUPERFAMILY L domain-like 29 284 - -
Vvi18g1230 943 Gene3D Ribonuclease Inhibitor 246 546 IPR032675 -
Vvi18g1230 943 Pfam Protein kinase domain 623 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1230 943 SMART LRR_typ_2 116 139 IPR003591 -
Vvi18g1230 943 SMART LRR_typ_2 140 164 IPR003591 -
Vvi18g1230 943 SMART LRR_typ_2 332 356 IPR003591 -
Vvi18g1230 943 SMART LRR_typ_2 188 212 IPR003591 -
Vvi18g1230 943 SMART LRR_typ_2 477 499 IPR003591 -
Vvi18g1230 943 SMART LRR_typ_2 500 533 IPR003591 -
Vvi18g1230 943 SMART LRR_typ_2 380 404 IPR003591 -
Vvi18g1230 943 SMART LRR_typ_2 284 308 IPR003591 -
Vvi18g1230 943 ProSiteProfiles Leucine-rich repeat profile. 479 501 IPR001611 GO:0005515
Vvi18g1230 943 PANTHER LRR RECEPTOR-LIKE KINASE 177 916 - -
Vvi18g1230 943 PANTHER LRR RECEPTOR-LIKE KINASE 3 183 - -
Vvi18g1230 943 Gene3D Transferase(Phosphotransferase) domain 1 699 912 - -
Vvi18g1230 943 ProSitePatterns Protein kinases ATP-binding region signature. 626 654 IPR017441 GO:0005524
Vvi18g1230 943 Pfam Leucine rich repeat 95 153 IPR001611 GO:0005515
Vvi18g1230 943 Pfam Leucine rich repeat 358 417 IPR001611 GO:0005515
Vvi18g1230 943 Pfam Leucine rich repeat 459 513 IPR001611 GO:0005515
Vvi18g1230 943 ProSitePatterns Serine/Threonine protein kinases active-site signature. 742 754 IPR008271 GO:0004672|GO:0006468
Vvi18g1230 943 Gene3D Ribonuclease Inhibitor 26 179 IPR032675 -
Vvi18g1230 943 SUPERFAMILY Protein kinase-like (PK-like) 598 905 IPR011009 -
Vvi18g1230 943 Pfam Leucine Rich Repeat 262 284 IPR001611 GO:0005515
Vvi18g1230 943 SMART serkin_6 620 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1230 943 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Vvi18g1230 943 SUPERFAMILY RNI-like 205 520 - -
Vvi18g1230 943 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 183 - -
Vvi18g1230 943 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 177 916 - -
Vvi18g1230 943 Gene3D Ribonuclease Inhibitor 180 239 IPR032675 -
Vvi18g1230 943 Gene3D Phosphorylase Kinase; domain 1 587 698 - -
Vvi18g1230 943 ProSiteProfiles Protein kinase domain profile. 620 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1230 - - - vvi:100259127 1555.04
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1230 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1472 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000434 1 4 5 2 3 4 5 3 4 4 4 4 5 4 3 5 4 5 6 4 4 3 3 2 3 4 3 1 2 3 107
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76342 PF00069 Pkinase 1.70E-41 CL0016 Vvi PK