Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1234 ATGATACACCCTCGACTCTCCAACCTCACTTCCCTCCAATTGCTAGATCTTTCCAACAATTCATTTTATGGCCAACTTCAACTGGATTTTAGCCATCTGTCACTCCTTCAGAATATTAACCTTGCAAGAAACTCCATTAATGATACAATTCGAGTTGGTCTTTCTCATTGTTATAACCTTGAGGAGATTTATTTTGAGCACAACCAACTTATTGGGAACCTTCCATCTGAACTTGGAGATCTGCCGAGACTCAGAATTCTTGACGTTGCAGCGAATAACCTTACAGGTGGAAAGATCCCTTATTCCATCTACAACATCTCTTCTTTGATCTACTTATCTGTAACAGAAAATATGCTTGTTGGAGAACTACCAACTGATATGGGCCTTGTACTTCCAAACCTGGCAGAAGTCTACTTAGCACATAACCAGCTGGAAGGGCCAATTCCCAGTTCTTTCTCTAATGCTTCACAAATTCAAGTCCTAGACTTTTCTTCAAACCACTTTCAAGGGCCAGTTCCTCTACTTGCAAACTGTACACAGTTGGAGTTTCTATATCTTAATGATAACCAGCTAGCTGGTGAGCTTCCAACTTCAGTTGCGAATCTTTCTACTCATCTCCTTGAATTTTGCTTTGGCAGCAATTTTCTGACTGGTAGCATTCCCCGAGGATTTGAAAGATTTCAAAATCTCTGGGCCTTGGACATACACCAAAATCTTTTCACAGGTATGATACCAAATTCCCTAGGAAAACTTCAGCAACTACAGAGATTATTGGTTGATAATAATATGTTATCCGGAGAAATTCCAGATATCTTTGGCAATCTTACACGACTCTTTCTGCTGACAATGGGGTACAACCAGTTCTCTGGTAGAATCCCCACAAGTATTGGAGAGTGCCAGAATTTAAAGAGACTGGGTCTAAGACAGAACAAGCTCAATGGTAGCATACCCAAGGAGATTTTCAGACTTCATGATATAATCGAGATATATTTGGCGCATAATGAACTAAGTGGTTCTCAGCCCGCCCTAGTTGAAAGTTTGGAACACCTTGAGGTCCTGGATGTTTCTAATAACCAGCTGTCAGGAAATATTTCAACAACAATTGGTTCTTGCTTAAGTCTGCGTAGTTTCAATATTGCCACAAACAAACTCTCAGGTGCCATACCAGTGTCGATGGGTAAATTAATAGCATTGGAGAGCTTGGATCTTTCTTCCAACAGTCTGACTGGACAAATCCCCGAAGAGTTACAGGATCTTTTGTATTTTCAGATCTTAAATTTGTCTTTCAATGACTTGGAAGGACCAGTTCCAAGAAAAGGTGTTTTCATGAACCTTACCTGGCTTTCTCTTACAGGAAATAATAAGCTCTGTGGTAGTGACCCTGAGGCTGCAGGAAAGCTGAGAATCCCCACATGTATCACAAAAGTGAAGTCAAATAGGCATTTGATACTCAAGATTGTGATGCCAGTTGCCAGCTTTACCCTGTTAATGTGTGCAGCCTGTATCACATGGATGCTGATCACCCAAAACAAGAAAAAGAGGAGAGGAACAACTTTTCCATCTCCTTGTTTCAAGGCGTTGCCGCCAAAGATATCATACTCTGACATCCAGCATGCTACAAATGATTTCTCCGCAGAAAATTGGGTAGGAAAGGGAGGCTTTGGATCTGTATATAAAGGAGTTTTCAGAACTGGTGAAAATGGGGTCAACACCATTTTTGCAGTGAAGGTTATCGACTTACAACAAGGTGAAGCTTCTGAGAATTTCAATGCAGAGATTTCAACAAGTAGGGATGTCTACAGCTATGGAATTTTGCTGCTTGAGATATTCACAGCAAAGAAACCCACAGATGAAATGTTTCAGGAAGGTTTAGATCAGCATAAGTTGGCATCCGCTCTGCTCATAAATCAATTTTTAGATATGGCTGACAAACGGCTTTTTAACAATGATGCTTGTACAGACAATAGCATCTTCACTAGTTCTTCTGGTGACTTTAACAGCATCGGTACTAGCAGCAATACTTTGTCCCATTGGAAAATCAAAACTGAAGAGTCCTCTACCTCATCCAGTAACCAGGAAAATATCTCTTTCCTCTTTTCTTATGACTCATCCATTGGATACTCATTAGACTACTCTTCATTTATAATTTCAAGACAACTGCAGGAACACAACACTATAGAGACTAACACCAACTTTCTGTGCTTCTTTAAGGTACAAATGCTTTGTAAAATAACATACATGAACCATATATTATCACTCAGAAACACAGAGAAATTCTTAGATTTATTTGGCAACCTTCCCGAAAACAGCTCTTGGGAACTCAATCCCACGATTATGGACTTGTTGAGCCGTATCCTCCCCTTCCTGCATCATACTGGTCTTCATAATCAACATGAACAGATAAACCTAGAGCCTTCCGTCCTGCAACACAAAAATGATAGGCGGTCAGGAACACAGATGAGTAGACCCTTCTGTTTGAAGATTTCTCAAAGGATTTCAACAAGTAGGGATGTCTACAGCTTTGGAATTTTGCTGCTTGAGATATTCACAGCAAAGAAACCCACAGATGAAATGTTTCAGGAAGGTTTAGATCAGCATAAGTTGGCATCCGCTCTGCTCATAAATCAATTTTTAGATATGGCTGACAAACGGCTTTTTAACAATGATGCTTGGGATCAGAGAGATCATAAAAAAAAAATGAGAAAAAAAGTGCAATCACACCAGACAAAGGAAGAGGGAACAAGAGGAAGAAAAATTCTAAGCATAGAGGAAAGGACACTGCAGAGAAAAAGGAAGAAATTTTTTCAAATCTGGTCCGTTTGGGTGGAAATCAAACACAAGAAGATGTCTACCTTCAGCGGCGATGAGATGGCTCCATTCTTCGGTTTCCTCGACGCTGCTACCACCCTTGTTTTCTCCTATATGGGAGTGTCATATGGAACCACAAAGAACGGGGTTGGTGTGGCCTCCATGGGTGTGATGAGATTGGAACTTACTGTCCAAACACTGAAGTTGAATGATCAAGAATTCCTTGGAGAATGCAGTTGTGTTCTATCAGAGATATTGACTAAACAAGGCCAAAATTTAACCTTAGATCTTCATAACAGAAATGGGAATAGGGGTTTGAAAAACCTAGGGAAACTCATTGTCCATGCAGAGGAAACAGCTGCTTCAAGGAAATCTATTGATGTTATATTCCATTGTTCACATTTGGAAAACAAAGACTTGGTTTCTAAAAGTGACCCTTTTCTAAGAATATCTAGGATGGTTGAACATGGAGGTTTTTTTTCAATTTGCAAGACAAAAGTGGTTGATAACAACTTGAATCCAATCTGGAGGCCTCTACGTTTGACAATGAAGCAATTTGTTAGCAAGGATAACCTATTAGTTATTGAGTGCTTTGATTTCAATACTAGTGGGAATAATGTACTGATTATTGAACTTCAAAAATCAGTGAAGGTTTTGAAGGACCAACTATTTGTTGATCAATTTTGTGAGAAGCAACTATACAGTTTTATTGATTATGTATCTAGTGGATGTGCACTTAATTTTATGGTTGTTGTCGATTTTACTGCTTCAAATGGAAATCCTCGAACTCCAGATTCTTTGCACTACATTGATCATTTTGGCCGGTTCAATGCTTACCAACAAGCTATAATGGACGTCGAAGAGGTCATACAATTTTATGATTCTGATAGGCGCTTTCCTGCATGGGGATTTGGGAGAAGAATAATGGATGGTACCATATCACATTGTTTTAACTTAAATGGAAGTGCAAGTGGTGTTGAGGTTGAAAGGGTCCATAGATCATGGCTGCCTATGCAAGTGCACTAA 3834 39.57 MIHPRLSNLTSLQLLDLSNNSFYGQLQLDFSHLSLLQNINLARNSINDTIRVGLSHCYNLEEIYFEHNQLIGNLPSELGDLPRLRILDVAANNLTGGKIPYSIYNISSLIYLSVTENMLVGELPTDMGLVLPNLAEVYLAHNQLEGPIPSSFSNASQIQVLDFSSNHFQGPVPLLANCTQLEFLYLNDNQLAGELPTSVANLSTHLLEFCFGSNFLTGSIPRGFERFQNLWALDIHQNLFTGMIPNSLGKLQQLQRLLVDNNMLSGEIPDIFGNLTRLFLLTMGYNQFSGRIPTSIGECQNLKRLGLRQNKLNGSIPKEIFRLHDIIEIYLAHNELSGSQPALVESLEHLEVLDVSNNQLSGNISTTIGSCLSLRSFNIATNKLSGAIPVSMGKLIALESLDLSSNSLTGQIPEELQDLLYFQILNLSFNDLEGPVPRKGVFMNLTWLSLTGNNKLCGSDPEAAGKLRIPTCITKVKSNRHLILKIVMPVASFTLLMCAACITWMLITQNKKKRRGTTFPSPCFKALPPKISYSDIQHATNDFSAENWVGKGGFGSVYKGVFRTGENGVNTIFAVKVIDLQQGEASENFNAEISTSRDVYSYGILLLEIFTAKKPTDEMFQEGLDQHKLASALLINQFLDMADKRLFNNDACTDNSIFTSSSGDFNSIGTSSNTLSHWKIKTEESSTSSSNQENISFLFSYDSSIGYSLDYSSFIISRQLQEHNTIETNTNFLCFFKVQMLCKITYMNHILSLRNTEKFLDLFGNLPENSSWELNPTIMDLLSRILPFLHHTGLHNQHEQINLEPSVLQHKNDRRSGTQMSRPFCLKISQRISTSRDVYSFGILLLEIFTAKKPTDEMFQEGLDQHKLASALLINQFLDMADKRLFNNDAWDQRDHKKKMRKKVQSHQTKEEGTRGRKILSIEERTLQRKRKKFFQIWSVWVEIKHKKMSTFSGDEMAPFFGFLDAATTLVFSYMGVSYGTTKNGVGVASMGVMRLELTVQTLKLNDQEFLGECSCVLSEILTKQGQNLTLDLHNRNGNRGLKNLGKLIVHAEETAASRKSIDVIFHCSHLENKDLVSKSDPFLRISRMVEHGGFFSICKTKVVDNNLNPIWRPLRLTMKQFVSKDNLLVIECFDFNTSGNNVLIIELQKSVKVLKDQLFVDQFCEKQLYSFIDYVSSGCALNFMVVVDFTASNGNPRTPDSLHYIDHFGRFNAYQQAIMDVEEVIQFYDSDRRFPAWGFGRRIMDGTISHCFNLNGSASGVEVERVHRSWLPMQVH* 1278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13920143 13948282 - Vvi18g1234 Vvi18g1234 780937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1234 1277 CDD C2B_Copine 1062 1162 IPR037768 -
Vvi18g1234 1277 SMART LRR_sd22_2 131 157 - -
Vvi18g1234 1277 SMART LRR_sd22_2 178 204 - -
Vvi18g1234 1277 SMART LRR_sd22_2 57 76 - -
Vvi18g1234 1277 SMART LRR_sd22_2 395 418 - -
Vvi18g1234 1277 SMART LRR_sd22_2 347 366 - -
Vvi18g1234 1277 SMART LRR_sd22_2 81 108 - -
Vvi18g1234 1277 SMART C2_3c 1065 1164 IPR000008 -
Vvi18g1234 1277 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1065 1146 IPR035892 -
Vvi18g1234 1277 Pfam Copine 1202 1266 IPR010734 -
Vvi18g1234 1277 SUPERFAMILY L domain-like 2 203 - -
Vvi18g1234 1277 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 97 177 - -
Vvi18g1234 1277 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 830 905 - -
Vvi18g1234 1277 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 96 - -
Vvi18g1234 1277 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 175 594 - -
Vvi18g1234 1277 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 592 665 - -
Vvi18g1234 1277 ProSitePatterns Protein kinases ATP-binding region signature. 549 576 IPR017441 GO:0005524
Vvi18g1234 1277 Gene3D Ribonuclease Inhibitor 1 99 IPR032675 -
Vvi18g1234 1277 Pfam Leucine Rich Repeat 398 418 IPR001611 GO:0005515
Vvi18g1234 1277 Gene3D - 958 1006 IPR035921 -
Vvi18g1234 1277 SUPERFAMILY L domain-like 204 459 - -
Vvi18g1234 1277 ProSiteProfiles Protein kinase domain profile. 543 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1234 1277 Pfam Leucine rich repeat 301 360 IPR001611 GO:0005515
Vvi18g1234 1277 Pfam Leucine rich repeat 132 191 IPR001611 GO:0005515
Vvi18g1234 1277 Gene3D Phosphorylase Kinase; domain 1 504 601 - -
Vvi18g1234 1277 Gene3D Transferase(Phosphotransferase) domain 1 789 917 - -
Vvi18g1234 1277 SUPERFAMILY Protein kinase-like (PK-like) 518 595 IPR011009 -
Vvi18g1234 1277 MobiDBLite consensus disorder prediction 896 915 - -
Vvi18g1234 1277 ProSiteProfiles C2 domain profile. 1044 1165 IPR000008 -
Vvi18g1234 1277 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 830 905 - -
Vvi18g1234 1277 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 2 96 - -
Vvi18g1234 1277 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 592 665 - -
Vvi18g1234 1277 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 97 177 - -
Vvi18g1234 1277 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 175 594 - -
Vvi18g1234 1277 SMART LRR_typ_2 251 274 IPR003591 -
Vvi18g1234 1277 SMART LRR_typ_2 9 32 IPR003591 -
Vvi18g1234 1277 SMART LRR_typ_2 33 57 IPR003591 -
Vvi18g1234 1277 SMART LRR_typ_2 131 154 IPR003591 -
Vvi18g1234 1277 SMART LRR_typ_2 299 323 IPR003591 -
Vvi18g1234 1277 SMART LRR_typ_2 395 418 IPR003591 -
Vvi18g1234 1277 SMART LRR_typ_2 347 371 IPR003591 -
Vvi18g1234 1277 Pfam C2 domain 1065 1145 IPR000008 -
Vvi18g1234 1277 Gene3D C2 domain 1064 1159 IPR035892 -
Vvi18g1234 1277 Gene3D Ribonuclease Inhibitor 100 465 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1234 - - - vvi:100260240 940.643
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1234 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000909 3 5 3 2 2 2 3 3 2 2 2 2 3 1 2 3 2 3 3 2 2 2 3 2 2 2 1 4 6 9 83