Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1235 ATGAACAAGCTAGGAGCTCTTGATGCTAACACCGATATATATGCACTTCTATCTTTGAAATCCACAGCCTCTGACCTTCATGCTGCTTTGTTAGTTTGGAACCTAAATTCATCGCCTATACTTGGTACGGTGTCTCTTGCACCAATAAAGGAACTCAAGAATGGAACCTCAATTCATCTCACTGTACTCAGTTGGCTTGGTTCACTTAACTTGGTTCATTCATTTATAAACCACTGTTCAATCTCTCCACCTGCCCGGACTTGGCCTTTCTGGTATTATACCTCCACACCTCTTCAACCTCACATCCCTTCAAGTTTTAGATCTCATTGTTATAATCTCAGAGAGATCAATTTAACGAGGAACCAACTTGTTGGCTCCCTTCCATCTCAATTAGGCCATCTGTCTAGACTGAAATTTATGGATGTGTATGCCAACAATCTTAGTGGTGCAATCCCTCCAACTTTTGGAAATCTCACCTCTCTTACCCATCTAAACCTAGGAAGAAACAATTTTCGTGGCGAAATTCCAAAGGAGTTGGGTAATCTCCATAATCTAGTTTCTCTTCGCCTTTCAGAGAACCAATTTTCTGGCCAGATACCGAATTCACTTTATAACATTTCTTCTTTATCTTTTCTGTCACTAACCCAAAATCATCTTGTTGGAAAACTACCAACTGATATGGGTCTTGCTCTCCCTAATCTCAGGCAACTCTTGTTGGCTGAGAACAGCTTTGAAGGATTGATACCCAATTCTTTAAACAATGCTTCACAAATTCAGGTCCTTGACCTCACTTCAAATTTATTTCAAGGGTCAATTCCTTTCCTTGGGAACATGAATAAACTTATCATGCTAAATCTAGGAACGAATTATCTTTCTTCCACCACAGAGCTGAATCTTCAGGTATTCAATTCCCTCACAAACTGTACCCTATTGGAAAGCCTCACTCTGGATTCCAACAAACTAGCCGGCGACCTTCCAAGTTCAGTTGCAAATCTCCTGAAGCAGCTCTCCTTATTGGATGTTTCTGACAACCAGTTGTCCGGAAACATCCCAGAAACAATTGGTGCCTGCTTAAGTTTGCAAACTCTCAGCATGGCAAGAAATGAAATAATGGGCTCAATACCGGATAAAGTGGGCAAATTAGTGGCACTGGAGAGCATGGATCTTTCTTCTAACAATCTCTCTGGCCCAATCCCTGAAGATTTGGGGAGTCTGAAGGTTTTGCAAAGCTTAAATTTGTCTTTCAATGACTTGGAAGGACAACAAGCAACAGACCGTTTTGCAGCAGAAAATTTAATAGGAAAAGGAGGCTTCGGGTCTGTTTATAAAGGAGCCTTCAGAACTGGTGAAGATGGAGTCGGCAGCACGCTTGCTATAAAGGTCCTTGACCTGCAGCAGAGCAAAGCTTCTGAGAGTTTCTATGCAGAATGTGAAGCTCTGAGGAATATTCGGCATCGGAACCTTGTGAAGGTTGTTACTTCATGCTCTAGCATTGATCACAGCGGAGGTGAATTCAAGGCCTTGGTTATGGAGTTCATGTCTAATGGTAGTTTACACAATTGGTTGTACCCGGAAGACTCCCAATCTAGGTCGAGTCTGAGCTTAATCCAGCGACTGAACATAGCCATTGACATAGCTTCTGCCATGGATTACCTGCACCATGACTGTGACCCACCTGTAGTCCATTGTGATTTGAAACCTGGAAATGTGCTTTTGGATGATGATATGGCTGCTCATGTGGGAGACTTTGGATTGGCAAGGTTTCTTTCTCAAAATCCATCACAGAGTGAAAGCAGCACAATAGGACTAAAGGGCTCAATTGGCTACATTGCTCCAGAGTATGGTTTGGGTGGAAAAGCTTCAACAAATGGAGATGTCTACAGTTATGGAATTCTGCTGCTTGAGATATTCACAGCTAGGAAGCCCACTGATGAGGTGTTTCAGCAAGGCCTAAACCAGAAAAAATATGCATTGGCAGTGGAAGCAAATCAAGTTTCAGGAATTGTTGATCCTAGGCTTTTCAGCCATACTGCCATAATAAGAGTTGGTTTGTTTTGTGCAGATCATTCCCCTAATGAACGTTTAACCATGAGAGAAACTTTAACCAAGTTGCAAGAGATCAAGAAATTTCTGCTGGAGCTGTGG 2145 42.19 MNKLGALDANTDIYALLSLKSTASDLHAALLVWNLNSSPILGTVSLAPIKELKNGTSIHLTVLSWLGSLNLVHSFINHCSISPPARTWPFWYYTSTPLQPHIPSSFRSHCYNLREINLTRNQLVGSLPSQLGHLSRLKFMDVYANNLSGAIPPTFGNLTSLTHLNLGRNNFRGEIPKELGNLHNLVSLRLSENQFSGQIPNSLYNISSLSFLSLTQNHLVGKLPTDMGLALPNLRQLLLAENSFEGLIPNSLNNASQIQVLDLTSNLFQGSIPFLGNMNKLIMLNLGTNYLSSTTELNLQVFNSLTNCTLLESLTLDSNKLAGDLPSSVANLLKQLSLLDVSDNQLSGNIPETIGACLSLQTLSMARNEIMGSIPDKVGKLVALESMDLSSNNLSGPIPEDLGSLKVLQSLNLSFNDLEGQQATDRFAAENLIGKGGFGSVYKGAFRTGEDGVGSTLAIKVLDLQQSKASESFYAECEALRNIRHRNLVKVVTSCSSIDHSGGEFKALVMEFMSNGSLHNWLYPEDSQSRSSLSLIQRLNIAIDIASAMDYLHHDCDPPVVHCDLKPGNVLLDDDMAAHVGDFGLARFLSQNPSQSESSTIGLKGSIGYIAPEYGLGGKASTNGDVYSYGILLLEIFTARKPTDEVFQQGLNQKKYALAVEANQVSGIVDPRLFSHTAIIRVGLFCADHSPNERLTMRETLTKLQEIKKFLLELW 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13949518 13961249 - Vvi18g1235 Vvi18g1235 780938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1235 715 PANTHER - 333 421 - -
Vvi18g1235 715 PANTHER - 5 332 - -
Vvi18g1235 715 PANTHER - 421 678 - -
Vvi18g1235 715 SMART LRR_typ_2 182 206 IPR003591 -
Vvi18g1235 715 SMART LRR_typ_2 158 181 IPR003591 -
Vvi18g1235 715 SMART LRR_typ_2 381 405 IPR003591 -
Vvi18g1235 715 SMART LRR_typ_2 231 254 IPR003591 -
Vvi18g1235 715 SMART LRR_typ_2 333 357 IPR003591 -
Vvi18g1235 715 Gene3D Phosphorylase Kinase; domain 1 437 513 - -
Vvi18g1235 715 Pfam Protein tyrosine and serine/threonine kinase 430 703 IPR001245 GO:0004672|GO:0006468
Vvi18g1235 715 ProSiteProfiles Protein kinase domain profile. 427 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1235 715 PANTHER OS04G0122200 PROTEIN 333 421 - -
Vvi18g1235 715 PANTHER OS04G0122200 PROTEIN 5 332 - -
Vvi18g1235 715 SUPERFAMILY L domain-like 70 420 - -
Vvi18g1235 715 ProSitePatterns Protein kinases ATP-binding region signature. 433 460 IPR017441 GO:0005524
Vvi18g1235 715 Gene3D Transferase(Phosphotransferase) domain 1 514 711 - -
Vvi18g1235 715 SMART serkin_6 427 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1235 715 SUPERFAMILY Protein kinase-like (PK-like) 409 704 IPR011009 -
Vvi18g1235 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 560 572 IPR008271 GO:0004672|GO:0006468
Vvi18g1235 715 PANTHER OS04G0122200 PROTEIN 421 678 - -
Vvi18g1235 715 Pfam Leucine rich repeat 144 195 IPR001611 GO:0005515
Vvi18g1235 715 Pfam Leucine rich repeat 359 418 IPR001611 GO:0005515
Vvi18g1235 715 Gene3D Ribonuclease Inhibitor 18 436 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1235 - - - vvi:100255549 660.603
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1235 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000052 15 13 4 11 4 8 7 7 11 17 9 10 8 7 14 8 11 4 7 11 14 16 4 8 4 14 8 18 7 5 284
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76343 PF07714 PK_Tyr_Ser-Thr 2.70E-42 CL0016 Vvi PK