Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1237 ATGAAGAAGCTTCACCATCTCTCACTGTTCATCCTCCATTTCCAAATCATTCTATTCTCCAGCATGAACACGGTGGAAGCTCTAGATGCTAACCCCAACAAACAGGCGCTTTTGTCTTTCAAATCCACAGTCTCGGACCCTCAAAATGCTCTCTCAGATTGGAACTCCAGCTCATCTCACTGCACTTGGTTTGGTGTCACTTGCACCAGTAACAGAACCAGCGTCCAATCTCTCCACCTGCCTGGAGTTGGCCTCTCAGGCCAGATCCCTGCTGGGCTCTCTCATTGTTATAATCTCAGAGAGATCAATTTACGGAGGAACCAACTTGTGGGTCCCCTTCCATCTCAATTAGGCCATCTGTCTAGACTGAAATTTATGGATGTGTATGCCAACAATCTTAGTGGTGCAATCCCTCCAACTTTTGGAAATCTCACCTCTCTTACCCATCTAAACCTAGGAAGAAACAATTTTCGTGACGAAATTCCAAAGGAGTTGGGTAATCTCCATAATCTAGTTCTTCTTCGCCTTTCAGAGAACCAATTATCTGGCCAGATACCTAATTCACTTTATAACATTTCTTCTTTATCTTTTCTGTCACTAACCCAAAATCATCTTGTTGGAAAACTACCAACTGATATGGTTGCAAATCTGTCAGCCCATCTGCAACATTTTTGCATTGAAAGCAATCTCTTTACTGGGAAATTACCCAGAGGAATTGATAAGTTTCAGAGCCTCATATCCTTGACTTTGCAGCAAAATCTTTTCACAGGTGAGCTACCAAATTCCATAGGAAGACTCAACAAACTGCAGAGAATTTTTGTCCACGAAAACATGTTCTCAGGAGAAATTCCTAATGTCTTTGGGAATCTTACACAATTGTATATGCTCACACTGGGATACAATCAGTTTTCTGGTAGAATCCCTGTGAGTATTGGTGAATGCCAGCAATTAAACACCCTGGGTCTATCTTGGAACAGGCTAAATGGCAGCATACCAATAGAGATTTTCTCACTCTCTGGTCTCAGTAAACTATGGTTAGAAAAAAATTCTCTGCAGGGTTCTCTCCCCATTGAAGTGGGTAGCCTGAAGCAGCTCTCCTTATTGAATGTTTCTGACAACCAGTTGTCCGGAAACATCACAGAAACAATTGGCAACTGCTTAAGTTTGCAAACTCTTAGCATGGCAAGAAATGGAATAATGGGCTCAATACCGGATAAAGTGGGCAAACTAGTGGCATTGAAGAGCTTGGATCTTTCTTCCAACAATCTCTCTGGCCCAATCCCCGAATATTTGGGGAGTCTTAAGGATTTGCAAAGCTTAAATTTGTCTTTCAATGACTTGGAAGGAAAAGTTCCGAGGAGTGGGGTGTTCATGAATCTTAGCTGGGATTCTCTCCAAGGAAATGATATGCTTTGTGGAAGTGACCAAGAGAAGGGGACAAAGGAAAGCTTCTTTTCCCGTCCTTTCAAGGGGTTTCCTGAAAAGATGTCTTATTTTGAAATCCGGCTAGCAACAAACAGTTTTGCAGCCGAAAATTTGATAGGAGAAGGAGGCTTCGGGTCTGTTTATAAAGGAAGTTTCTATGCAGAATGTGAAGCTCTGAGGAATATTCGGCATCGGAACCTTGTGAAGGTTATCACTTCATGCTCTAGCATTGATCACACAGGAGGTGAATTCAAGGCTTTGGTCATGGAGTTCATGTCTAACGGTAGTTTATACAATTGGTTGAACCCGGAAGACTCCCAATCTAGGTCGAGTCTGACCTTAATCCAGAGACTGAATATCGCCATAGACGTGGCTTCTGCCATGGATTACCTGCACCATGACTGTGACCCACCTATAGTCCATTGTGATTTGAAACCTGGAAATGTGCTTTTGGATGATGATATGGCTGCTCATGTGGGAGACTTTGGATTGGCAAGGTTTCTTTCTCAAAATCCATCACAGAGTGAAAGCAGCACAATAGGACTAAAGGGCTCAATTGGCTACATTGCTCCAGAGTATGGTTTGGGTGGAAAAGCTTCAACAAATGGAGATGTCTACAGTTTTGGAATTCTGCTGCTTGAGATATTCACAGCAAGGAAGCCCACTGATGAGATCTTTCAGCAAGGTCTAAACCAGAAAAAATATGCATTGGCAGTGCAAGCAAATCAAGTTTCAGAAATTGTTGATCCTGGGATTTTCAGTCATACTAATTCTTCGGAGCTTAGCCCCTTTATCAGTTCCTCTGCATGCAGCAACCACAGCAGCACAAGCAGTACCATCAGCGTCGGGCGAAATAAAAATGAAGAGTGCTTGGCAGCCATAATAAGAATTATTAACCTTGCAAGCAACTCCATTAATGGTACAATTCCAGTTGGTCTCTGTCATTGTTATAATCTTGAGGAGATTTATTTCAAGCACATCCAACTTATTGGGAACCTTCCATCTGAACTTGGAGATCTGTCGAGACTCAGAATTCTTGACGTTGCAGTGAATAACCTTACAGATGATGAAAGCAGCACAATTGGACTAAAGGGCTCGATTGGTTACATTGCTCCAGGCACCACACACAACTTAAACTGTAGAAGGATTTCAACAAGTAGGGATGTCTACAGCTTTGGAATTTTGCTGCTTGAGATATTCACAGCAAAGAAACCCACAGATGAAATGTTTCAGGAAGGTTTAGATCAGCATAAGTTGGCATCCGCTCTGCTCATAAATCAATTTTTAGATATGGCTGACAAACGGCTTTTTAACAATGATGCTTGTACAGACTATAGCACCTTCACTAGTTCTTCTGATTATTTAATTAAAGTGATGACGGATGGGATTAGAACACAAAAAGTTCATCCATTGGAATATTCCGTAAAGCAATTGAAGGAGACCTCAAATCAACAATCGTTAGAACTGAAGGAGTTGGCCCGAATGATGATAGCGATGAACCTCAACATTGATCATCTAACAGAAAAATCGTTGGTTTCAATGGTTTCCATGGGGGTTTGTGGTTTAATTGCAATCAAGCCAAGAACGGAGAAGGTTGAGATTGCCTCTATTCATTTGAAGGGCAAGACTCTACAATGGTTCAAGGGTTATGAAGCCTTTGTTAAGGAATTAAATTGGAAGACATTTGTTGCAAATATAATTATGCAACTTGGACCTGGAACGTATGACAATATGATGGGCTAG 3168 41.67 MKKLHHLSLFILHFQIILFSSMNTVEALDANPNKQALLSFKSTVSDPQNALSDWNSSSSHCTWFGVTCTSNRTSVQSLHLPGVGLSGQIPAGLSHCYNLREINLRRNQLVGPLPSQLGHLSRLKFMDVYANNLSGAIPPTFGNLTSLTHLNLGRNNFRDEIPKELGNLHNLVLLRLSENQLSGQIPNSLYNISSLSFLSLTQNHLVGKLPTDMVANLSAHLQHFCIESNLFTGKLPRGIDKFQSLISLTLQQNLFTGELPNSIGRLNKLQRIFVHENMFSGEIPNVFGNLTQLYMLTLGYNQFSGRIPVSIGECQQLNTLGLSWNRLNGSIPIEIFSLSGLSKLWLEKNSLQGSLPIEVGSLKQLSLLNVSDNQLSGNITETIGNCLSLQTLSMARNGIMGSIPDKVGKLVALKSLDLSSNNLSGPIPEYLGSLKDLQSLNLSFNDLEGKVPRSGVFMNLSWDSLQGNDMLCGSDQEKGTKESFFSRPFKGFPEKMSYFEIRLATNSFAAENLIGEGGFGSVYKGSFYAECEALRNIRHRNLVKVITSCSSIDHTGGEFKALVMEFMSNGSLYNWLNPEDSQSRSSLTLIQRLNIAIDVASAMDYLHHDCDPPIVHCDLKPGNVLLDDDMAAHVGDFGLARFLSQNPSQSESSTIGLKGSIGYIAPEYGLGGKASTNGDVYSFGILLLEIFTARKPTDEIFQQGLNQKKYALAVQANQVSEIVDPGIFSHTNSSELSPFISSSACSNHSSTSSTISVGRNKNEECLAAIIRIINLASNSINGTIPVGLCHCYNLEEIYFKHIQLIGNLPSELGDLSRLRILDVAVNNLTDDESSTIGLKGSIGYIAPGTTHNLNCRRISTSRDVYSFGILLLEIFTAKKPTDEMFQEGLDQHKLASALLINQFLDMADKRLFNNDACTDYSTFTSSSDYLIKVMTDGIRTQKVHPLEYSVKQLKETSNQQSLELKELARMMIAMNLNIDHLTEKSLVSMVSMGVCGLIAIKPRTEKVEIASIHLKGKTLQWFKGYEAFVKELNWKTFVANIIMQLGPGTYDNMMG* 1056
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 13974453 14000593 - Vvi18g1237 Vvi18g1237 780940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1237 1055 Gene3D Transferase(Phosphotransferase) domain 1 808 977 - -
Vvi18g1237 1055 ProSiteProfiles Protein kinase domain profile. 389 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1237 1055 SUPERFAMILY L domain-like 219 475 - -
Vvi18g1237 1055 Gene3D Phosphorylase Kinase; domain 1 488 527 - -
Vvi18g1237 1055 Gene3D Ribonuclease Inhibitor 143 215 IPR032675 -
Vvi18g1237 1055 Pfam Protein tyrosine and serine/threonine kinase 525 702 IPR001245 GO:0004672|GO:0006468
Vvi18g1237 1055 SUPERFAMILY Protein kinase-like (PK-like) 483 706 IPR011009 -
Vvi18g1237 1055 Pfam Leucine rich repeat 388 447 IPR001611 GO:0005515
Vvi18g1237 1055 SMART serkin_6 508 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1237 1055 Gene3D Ribonuclease Inhibitor 216 482 IPR032675 -
Vvi18g1237 1055 Coils Coil 950 984 - -
Vvi18g1237 1055 SMART LRR_typ_2 815 838 IPR003591 -
Vvi18g1237 1055 SMART LRR_typ_2 362 386 IPR003591 -
Vvi18g1237 1055 SMART LRR_typ_2 290 314 IPR003591 -
Vvi18g1237 1055 SMART LRR_typ_2 168 192 IPR003591 -
Vvi18g1237 1055 SMART LRR_typ_2 144 167 IPR003591 -
Vvi18g1237 1055 SMART LRR_typ_2 410 434 IPR003591 -
Vvi18g1237 1055 Gene3D Phosphorylase Kinase; domain 1 528 570 - -
Vvi18g1237 1055 PANTHER - 834 921 - -
Vvi18g1237 1055 PANTHER - 526 772 - -
Vvi18g1237 1055 PANTHER - 20 208 - -
Vvi18g1237 1055 PANTHER - 200 477 - -
Vvi18g1237 1055 PANTHER - 476 525 - -
Vvi18g1237 1055 PANTHER - 772 829 - -
Vvi18g1237 1055 SUPERFAMILY Protein kinase-like (PK-like) 828 886 IPR011009 -
Vvi18g1237 1055 SUPERFAMILY L domain-like 32 234 - -
Vvi18g1237 1055 Gene3D Transferase(Phosphotransferase) domain 1 571 774 - -
Vvi18g1237 1055 Gene3D Ribonuclease Inhibitor 32 142 IPR032675 -
Vvi18g1237 1055 SUPERFAMILY L domain-like 770 833 - -
Vvi18g1237 1055 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Vvi18g1237 1055 PANTHER OS04G0122200 PROTEIN 20 208 - -
Vvi18g1237 1055 PANTHER OS04G0122200 PROTEIN 526 772 - -
Vvi18g1237 1055 PANTHER OS04G0122200 PROTEIN 476 525 - -
Vvi18g1237 1055 PANTHER OS04G0122200 PROTEIN 200 477 - -
Vvi18g1237 1055 PANTHER OS04G0122200 PROTEIN 772 829 - -
Vvi18g1237 1055 PANTHER OS04G0122200 PROTEIN 834 921 - -
Vvi18g1237 1055 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76344 PF07714 PK_Tyr_Ser-Thr 3.50E-32 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1237 - - vvi:100854714 1102.04