Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1240 ATGGAGCACTCAGAGAATGTTTCTGGGATGTATGAAGCTGTATCCATGCCAAGGACTGGAAAGGATTCCATTTTCATACCAGGTAGAAAATCCAGCAGCAGAAGCTCAAGTGTGGTTCAACCTCAAGATGACAAAGATGAGGCTGGAATTAGGATACAAAAGAAGCGAAGCTTTAACAGGGAAAAGGAATTAGCAAGTGGAAAAGCTGTTCGCAAAACAAAGTCACTAAGTTCCCAATTCTTAGTTAATATAGATGAACTTTTTAATAATGTTGCTGGGAGCTTTGATGAAAAAGGTTCCATTCCTAGCAGGGCATCTAGCAATGGCTTAGGCTTCTCCACCCCACTAGCTGGATCCGTCTTGCCCTTGGATGACATTTCAGACGCCTCAAGACTGCAGATTCCCCGTCAGAAAGATAGTGCAACAAGGCAGTCTCGGTCAGCTCATGAGAAGGATCAGGATTCTTGTGGGTGGAGGAAAACAAACAGCAAACCTACCTTACCAATATATCTCAAGTTTGAAGATGTCAAATACAAAGTGGTAACAAAGGGAGGAAAGAGCTCTGATGAGAAGCATATATTACATGGCATTACTGGTTCAGTAGATCCAGGGGAGGTCTTAGCACTTATGGGGCCATCTGGTGGTGGTAAAACAACATTACTCAATCTCCTCAGTGGAAAGGTCAAAACCAACAGTGGTAGGATCACTTATAATGATCAACCATATGCTAAAACACTCAAGCATAGCAGGATTGGATTCGTGCTGCAAGATGACATTGTGTTTCCCCACCTTACAGTCAAAGAAACTCTAACATATGCAGCTTTGCTTCGTCTTCCCAATACATTAACCAGACAGCAGAAAAAGGAAAGAGTCATGGATATTATCAGTGAGCTAGATCTTGAAAGGTGCCAAAACACAATAATTGGTGGTGCATTAGTTAGAGGGATTTCTGGTGGTGAGAGAAAAAGAGTCTGTATCGGCAATGAAATCCTGCTCAACCCATCACTTCTCTTCCTTGATGAACCAACATCTGGTCTGGATTCAACAACTGCACTTCGGATTCTTCAGATGCTACAGAACACTGCAGAGGCTGGCAAGACAGTGGTGACTACAATTCATCAACCTTCAAGTAGACTATTCAGTATGTTTGACAAGTTAGTCCTCTTGGGTAAAGGAAACTCCTTGTACTTTGGAAAAGCCTCAGAAGCAATGCTATATTTCTCCTCAATAGGTTGTTCTCCACTTGAAGCCATGAACCCAGCAGAGTTTCTCATTGATCTTGCCAATGGAAACATAAGTAACAAATCAGTTCCATCAGAGTTGGAGGATAAGTACTCCCCCGGAAGACAAAATTTTGAAAATGAAGAGGGGAAGCCTTCTCCAGGAGAAGTCCATGAGTATCTTGTAGGGGCCTATGAAGAAAGAGTTGCAAACCTGGAGAAAATGAAGCTTCTAAGCCCAGTGCTGATAGACAGTGTGTCTGAGATGCAAAGGAGAGAAAATTCACCGGAATGGGGAGCAAATTGGTGGCAACAGTTTTCAATTCTTTTCAGAAGAGGCCTTAAGGAGAGACGCCATGAATATTTAAATGGTCTTCGTATAACCCAAGTTATATCCACTGCTGTAATCTTAGGATTGCTCTGGTGGCATTCTGATGCTTCATCTCCTAAGAAACTTCAAGATCAAGCAAGGTTGCTGTTCTTCATTTCAGTCTTTTGGGGTTTCCTCCCTCTATTCACTGCTATTTTCACATTCCCTCAAGAACGAGCTATGCTGGTTAAAGAGAGATCTGTGGATATGTATAGACTCAGTGCATACTTTGTAGCAAGAAACACAAGTGATCTTCCTTTGGATCTCATCCTGCCCATATTGTTTATGTTGATAGTATATTTCATGGCAGGCTTAAAGCCTAGCTTTGCGGCATTTTCTCTAACTATGCTTACAGTTTTCCTCAGCATTTTGGCTTCCCAGGGTCTAGGAATGACCATAGGTGCAGCACTGATGGATGTGAAGAAAGCAACAACACTGGCTTCTATTACTCTGATGACCTTCATGTTATCTGGCGGATTTTTTATCCAGGAGTTTCCATCTTTCATATCGTGGGCACGACACATCTCTTTCAACTACCATACATACAGGCTACTCCTGAAGATTCAGTATAGTTGCTCAAATTCAAATTATGAAGAAGGTCCCTGCAACTCTCCCTTCATCAGAGGACTAAAACTTAATAGGTCTGGAATGGAACTGGGAGCCATGGTAGCAATGTGTATTGGATATCGATTACTGGCCTACATATTCCTCAGGAGAATGAAACTCAGGACACTAACATAG 2331 42.21 MEHSENVSGMYEAVSMPRTGKDSIFIPGRKSSSRSSSVVQPQDDKDEAGIRIQKKRSFNREKELASGKAVRKTKSLSSQFLVNIDELFNNVAGSFDEKGSIPSRASSNGLGFSTPLAGSVLPLDDISDASRLQIPRQKDSATRQSRSAHEKDQDSCGWRKTNSKPTLPIYLKFEDVKYKVVTKGGKSSDEKHILHGITGSVDPGEVLALMGPSGGGKTTLLNLLSGKVKTNSGRITYNDQPYAKTLKHSRIGFVLQDDIVFPHLTVKETLTYAALLRLPNTLTRQQKKERVMDIISELDLERCQNTIIGGALVRGISGGERKRVCIGNEILLNPSLLFLDEPTSGLDSTTALRILQMLQNTAEAGKTVVTTIHQPSSRLFSMFDKLVLLGKGNSLYFGKASEAMLYFSSIGCSPLEAMNPAEFLIDLANGNISNKSVPSELEDKYSPGRQNFENEEGKPSPGEVHEYLVGAYEERVANLEKMKLLSPVLIDSVSEMQRRENSPEWGANWWQQFSILFRRGLKERRHEYLNGLRITQVISTAVILGLLWWHSDASSPKKLQDQARLLFFISVFWGFLPLFTAIFTFPQERAMLVKERSVDMYRLSAYFVARNTSDLPLDLILPILFMLIVYFMAGLKPSFAAFSLTMLTVFLSILASQGLGMTIGAALMDVKKATTLASITLMTFMLSGGFFIQEFPSFISWARHISFNYHTYRLLLKIQYSCSNSNYEEGPCNSPFIRGLKLNRSGMELGAMVAMCIGYRLLAYIFLRRMKLRTLT* 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 14023103 14027197 - Vvi18g1240 Vvi18g1240 780943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1240 776 MobiDBLite consensus disorder prediction 446 462 - -
Vvi18g1240 776 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 171 416 IPR003439 GO:0005524
Vvi18g1240 776 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 119 771 - -
Vvi18g1240 776 Pfam ABC-2 type transporter 511 720 IPR013525 GO:0016020|GO:0140359
Vvi18g1240 776 MobiDBLite consensus disorder prediction 436 463 - -
Vvi18g1240 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 404 IPR027417 -
Vvi18g1240 776 Pfam ABC transporter 194 344 IPR003439 GO:0005524
Vvi18g1240 776 Gene3D - 170 409 IPR027417 -
Vvi18g1240 776 CDD ABCG_EPDR 168 398 - -
Vvi18g1240 776 PANTHER ABC TRANSPORTER G FAMILY MEMBER 22-LIKE ISOFORM X1 119 771 - -
Vvi18g1240 776 MobiDBLite consensus disorder prediction 1 50 - -
Vvi18g1240 776 MobiDBLite consensus disorder prediction 134 160 - -
Vvi18g1240 776 MobiDBLite consensus disorder prediction 142 158 - -
Vvi18g1240 776 ProSitePatterns ABC transporters family signature. 316 330 IPR017871 GO:0005524
Vvi18g1240 776 SMART AAA_5 203 393 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1240 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - vvi:100256491 1507.66
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1240 . . . . . . . . . . . Cma09g01112 . . . . Cpe13g00716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01118 . . . . . Cpe02g00910 Bhi09g01524 . . . . Mch11g1474 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001139 3 3 3 3 3 2 2 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 3 3 1 3 3 3 3 79