Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1248 ATGTCGGAACATGAAGAGTACCGTTGTTTTATTGGCGGCCTTTCATGGTCAACATCTGATAGAAGTTTGAAAGAAGCATTTGAAAAATTTGGCCATCTCGTTGAGGCGAAGGTTGTTGTGGACAAGTTTTCTGGTCGCTCTCGTGGATTTGGCTTTGTTTCTTTTGATGACAAGCAAGCAATGGAAGATGCCATTAAGGAAATGCATGGCATGGATCTAGATGGACGATCTATCACTGTGGATAAAGCCCAGCCAAACCAAGGCTCTGGAAGAGATCGGGATGGGGATAGGGACCGGGACCGTGGTCGTGATCGTTACAATGATCGGGATCGTAACCGTGATTATGGAGGTGGACGGGGATCTAACGGTGGGGAGTGTTTTAAATGTGGAAAACCTGGACATTTTGCTAGGGAGTGTCCATCAAGTGAAGGTGCTAGAGGTGGTAGATATGGATGCTGGTAG 462 46.75 MSEHEEYRCFIGGLSWSTSDRSLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVSFDDKQAMEDAIKEMHGMDLDGRSITVDKAQPNQGSGRDRDGDRDRDRGRDRYNDRDRNRDYGGGRGSNGGECFKCGKPGHFARECPSSEGARGGRYGCW* 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 14130866 14134399 + Vvi18g1248 Vvi18g1248 780951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1248 153 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Vvi18g1248 153 SMART c2hcfinal6 125 141 IPR001878 GO:0003676|GO:0008270
Vvi18g1248 153 SUPERFAMILY Retrovirus zinc finger-like domains 106 146 IPR036875 GO:0003676|GO:0008270
Vvi18g1248 153 ProSiteProfiles Zinc finger CCHC-type profile. 126 141 IPR001878 GO:0003676|GO:0008270
Vvi18g1248 153 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 151 - -
Vvi18g1248 153 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 78 IPR000504 GO:0003723
Vvi18g1248 153 Gene3D - 117 149 - -
Vvi18g1248 153 PANTHER TRANSFORMER-2-RELATED 1 151 - -
Vvi18g1248 153 SUPERFAMILY RNA-binding domain, RBD 5 116 IPR035979 GO:0003676
Vvi18g1248 153 MobiDBLite consensus disorder prediction 87 116 - -
Vvi18g1248 153 SMART rrm1_1 8 81 IPR000504 GO:0003723
Vvi18g1248 153 MobiDBLite consensus disorder prediction 70 126 - -
Vvi18g1248 153 Pfam Zinc knuckle 125 141 IPR001878 GO:0003676|GO:0008270
Vvi18g1248 153 Gene3D - 1 104 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1248 - - - vvi:100256416 252.292
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009527 1 1 1 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 0 1 1 1 0 1 0 3 1 1 33