Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1250 ATGGCAGATCTTGTTAGCTACGGTAATGCAGAGCGTGACGTCGAGCAGGCATTAATTGCTCTTAAGAAGGGTGCTCAACTGCTTAAATATGGTCGTAAAGGGAAGCCCAAATTTTGTCCTTTTAGACTTTCCAATGATGAATCATCTCTGATCTGGATTTCAAGTAGTGGTGAAAGAATTTTGAAGTTAGCTTCTGTCTCTAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGATATCTACGTCCTGAGAAGGATTATTTGTCATTTTCTCTTATATACAACAACGGAAAGCGATCTCTTGATCTGATTTGCAAGGACAAAGTTGAGGCAGAAGTGTGGATTGCTGGGCTCAAAGCTTTGATTTCCTCTGGTCAAGGTGGGCGCTCCAAAATTGATGGATGGAGTGATGGAGGCCTCTACTTTGATGACAGCAAAGACTTGACTTCGAATAGTCCAAGTGACAGTTCAGTCAGTGCTACACGAGACATTAGCTCTCCAGAAGTTTCTGTCGGTTTCAACTCAAATACTTCTCCCAATAGCTATCGGCCTGAAAATTCTGTGCCTCCTGAAAGGTCACATGTAGCATTAGACCACACAAATATGCAAACAAAAGGATCTGGTTCAGATGCTTTTCGAGTAAGTGTTTCTAGTGCTCCCAGCACTTCCAGTCATGGTTCGGCCCCAGATGATTGTGATGCTTTAGGAGATGTATATATATGGGGTGAGGTTATATGCGATAATTTGGTCAAGCCATTGGAGTCCAATGTTGTTTTGGATGTACATCATATAGCCTGTGGTGTCAGGCATGCTGCCCTAGTTACAAGGCAAGGTGAAATTTTTACATGGGGTGAAGAATCTGGAGGAAGGCTCGGCCATGGCGTTGGGAGAGATGTCATTCAACCTCGTCTAGTTGAATCTTTAGCTTTTACTAGTGTTGATTTTGTTGCCTGTCCTCTTGAGGGACTTCAAGTTGCTTCAGTAACTTGTGGTCCATGGCACACAGCTTTAGTGACAACAACAAGACAGCTCTTTACATTTGGTGATGGGACATTTGGTGTATTGGGCCATGGTGACAAGGACAATGTTGCATATCCAAGAGAAGTAGAATCTTTATCTGGATTGAGAACAATTGCTGTTGCATGTGGGGTTTGGCACACTGCTGCTGTGGTTGAGGTTATTGTAACACAGTCTAGTGCAAGTGTTTCATCAGGAAAATTATTTACTTGGGGTGATGGAGATAAAAACCGTCTTGGACATGGAGACAAGGAACCCAGGCTTAAACCCACATGCGTGCCAGCACTTATTGAGTACAATTTTCAAAAAGTTGCTTGTGGGCATAGTTTAACTGTTGGGTTGACCACGTCAGGACAAGTTTGTACCATGGGAAGTACTGTCTATGGCCAACTTGGGAACCCCCAATCTGATGGAAAGCTACCTTGCTTTGTAGAAGATAAGCTTCTTGGGGAATGTGTTGAAGAGATTGCCTGTGGTGCGTACCATGTAGCAGTATTAACATCTAGGAATGAGGTTTATACATGGGGAAAGGGGGCTAATGGGAGGTTGGGCCATGGAGATATTGAAGATAGAAAAACACCAACTCTGGTTGAAACTTTGAAGGATAGACATGTCAAATATATTGCTTGTGGTTCAAACTACACAGCAGCTATATGTCTTCATAAATGGGTGTCTGGTACTGTCCAAATCTTTAGTTCTAGGTCTGTGTCACCTTTTTCTAGGAAACCTAGTCCTCCACGCTCTGCTACACCTGTTCCTACAACTTCTGGACTTTCCTTCTCCAAAAGCATTGCTGATAGTTTGAAGAAAACGAATGAACTTTTAAATCAAGAAGTGCTTAAGTTACGTGGACAGGTTGAGAGTCTGAGAGAGCGATGTGAACTTCAAGAATTGGAGCTTCAGAAATCAGCAAAGAAAGTTCAAGAAGCTATGGTAGTGGCTACTGAGGAATCTGCTAAATCTAAAGCTGCAAAAGAAGTTATAAAATCGCTTACTGCACAGCTCAAAGATATGGCTGAGAGACTGCCACCTGGGGTTTATGATGCTGAATGCATGAGGCCAGCTTACTTACTGAACGGTTTGGAGCCAAATGGCATTCACTATCCTGATTCAAATGGAGAGCGCCATTCAAGATCAGATTCAATTAATGGCTCTTGCTTGGCTTCTCCCACGGGAACCTACTCTGCTGTAATAAATGGAACTCAGGGTTCTACTCAATTGATGAGGGATCCACTTGGAACCAATGAAGCAAATCCATACCAACAGAATCTGGGACTTCTGACCTCCAATGTGAGGGATGAAAATCCAGATATTGGAATGCCAAATGGTGGTGGAGGGGTTCGGACAAGTAGCAGTAGTGTCTCTGAAGCTGTCGGTTGCAAGGATTCTGGGCCTCTCCAAGATGGTGAAGGTGGTACAAAATCTAGGAATTCAACTTTGAGTGACAACAGTCAAGTTGAAGCTGAGTGGATTGAACAGTATGAGCCCGGTGTATATATAACCCTTGTGGCCCTTCGTGATGGGACTAGAGATCTCAAAAGAGTGCGCTTCAGCCGAAGAAGATTTGGAGAACATCAAGCCGAGAATTGGTGGTCAGAAAATCGTGAAAAGGTGTATGAGAGATACAATGTTCGTGGGTCGGACAAGTCATCAGTTTCTGGCCAGGCTGCCCGTAGATCAGAGGGAGGCACCTCACCATCTTCCCGACTTTAG 2733 43.72 MADLVSYGNAERDVEQALIALKKGAQLLKYGRKGKPKFCPFRLSNDESSLIWISSSGERILKLASVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALISSGQGGRSKIDGWSDGGLYFDDSKDLTSNSPSDSSVSATRDISSPEVSVGFNSNTSPNSYRPENSVPPERSHVALDHTNMQTKGSGSDAFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVICDNLVKPLESNVVLDVHHIACGVRHAALVTRQGEIFTWGEESGGRLGHGVGRDVIQPRLVESLAFTSVDFVACPLEGLQVASVTCGPWHTALVTTTRQLFTFGDGTFGVLGHGDKDNVAYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIEYNFQKVACGHSLTVGLTTSGQVCTMGSTVYGQLGNPQSDGKLPCFVEDKLLGECVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDIEDRKTPTLVETLKDRHVKYIACGSNYTAAICLHKWVSGTVQIFSSRSVSPFSRKPSPPRSATPVPTTSGLSFSKSIADSLKKTNELLNQEVLKLRGQVESLRERCELQELELQKSAKKVQEAMVVATEESAKSKAAKEVIKSLTAQLKDMAERLPPGVYDAECMRPAYLLNGLEPNGIHYPDSNGERHSRSDSINGSCLASPTGTYSAVINGTQGSTQLMRDPLGTNEANPYQQNLGLLTSNVRDENPDIGMPNGGGGVRTSSSSVSEAVGCKDSGPLQDGEGGTKSRNSTLSDNSQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAENWWSENREKVYERYNVRGSDKSSVSGQAARRSEGGTSPSSRL* 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 14160238 14172215 - Vvi18g1250 Vvi18g1250 780953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1250 910 Pfam Transcription factor BRX N-terminal domain 656 691 IPR027988 -
Vvi18g1250 910 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 279 342 IPR000408 -
Vvi18g1250 910 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 381 391 IPR000408 -
Vvi18g1250 910 ProSiteProfiles BRX domain profile. 828 883 IPR013591 -
Vvi18g1250 910 MobiDBLite consensus disorder prediction 198 229 - -
Vvi18g1250 910 SUPERFAMILY RCC1/BLIP-II 236 563 IPR009091 -
Vvi18g1250 910 Gene3D - 321 478 IPR009091 -
Vvi18g1250 910 Gene3D - 479 574 IPR009091 -
Vvi18g1250 910 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 406 457 IPR000408 -
Vvi18g1250 910 MobiDBLite consensus disorder prediction 147 188 - -
Vvi18g1250 910 Pfam Transcription factor regulating root and shoot growth via Pin3 827 882 IPR013591 -
Vvi18g1250 910 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 458 509 IPR000408 -
Vvi18g1250 910 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 570 890 - -
Vvi18g1250 910 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 320 569 - -
Vvi18g1250 910 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 319 - -
Vvi18g1250 910 CDD PH_PLC_plant-like 12 124 - -
Vvi18g1250 910 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 343 394 IPR000408 -
Vvi18g1250 910 MobiDBLite consensus disorder prediction 576 596 - -
Vvi18g1250 910 MobiDBLite consensus disorder prediction 886 910 - -
Vvi18g1250 910 Pfam Regulator of chromosome condensation (RCC1) repeat 405 452 IPR000408 -
Vvi18g1250 910 Pfam Regulator of chromosome condensation (RCC1) repeat 511 558 IPR000408 -
Vvi18g1250 910 Pfam Regulator of chromosome condensation (RCC1) repeat 279 338 IPR000408 -
Vvi18g1250 910 Pfam Regulator of chromosome condensation (RCC1) repeat 344 391 IPR000408 -
Vvi18g1250 910 Pfam Regulator of chromosome condensation (RCC1) repeat 457 506 IPR000408 -
Vvi18g1250 910 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Vvi18g1250 910 Coils Coil 661 681 - -
Vvi18g1250 910 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 510 561 IPR000408 -
Vvi18g1250 910 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 320 569 - -
Vvi18g1250 910 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 319 - -
Vvi18g1250 910 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 570 890 - -
Vvi18g1250 910 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 329 339 IPR000408 -
Vvi18g1250 910 Gene3D - 189 320 IPR009091 -
Vvi18g1250 910 MobiDBLite consensus disorder prediction 147 230 - -
Vvi18g1250 910 Gene3D - 13 129 IPR011993 -
Vvi18g1250 910 MobiDBLite consensus disorder prediction 883 910 - -
Vvi18g1250 910 PRINTS Chromosome condensation regulator RCC1 signature 344 360 IPR000408 -
Vvi18g1250 910 PRINTS Chromosome condensation regulator RCC1 signature 378 391 IPR000408 -
Vvi18g1250 910 PRINTS Chromosome condensation regulator RCC1 signature 496 512 IPR000408 -
Vvi18g1250 910 PRINTS Chromosome condensation regulator RCC1 signature 512 526 IPR000408 -
Vvi18g1250 910 Coils Coil 605 646 - -
Vvi18g1250 910 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 265 275 IPR000408 -
Vvi18g1250 910 MobiDBLite consensus disorder prediction 810 824 - -
Vvi18g1250 910 SUPERFAMILY PH domain-like 13 123 - -
Vvi18g1250 910 MobiDBLite consensus disorder prediction 775 824 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1250 - - - vvi:100246114 713.375
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83