Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1252 ATGGTTGTGATTATTCTGTTTCTTCTCTTCATCTCTGAATTCTCTACAACAACAGGACAACTAGGGAATTCAAGCATTACCCTGGGCTCTTCTCTCTCCCCCACTGGCCCCTCGAATTGGTCTTCACATTCTGGTCAGTTTGCCTTTGGATTCTACCAAAAAGGCAAAGGCTACGCTGTTGGCATCTGGTTTAACAGAATTTCACGAAGAACAGTCATATGGACTGCAAATCGGGATGCTGCACCACTCTCCCGAGATGTTCAACTGATTTTCACAAGTGACGGCAAGCTCATCTTGCAACAGAATCAAGGGGAAAGCATATCCATTGTTGACAGAGATCTTCCGCCTGCTTCCTCAGCTTCCATGCTCGATGATGGCAATTTTGTCCTAAAAAATTCAAGCTCCAGTGTCATATGGCAGAGTTTTGATACTCCAACAGACACCATTTTACCAGGGCAGCCTCTTTTGGCGGGGCAAAAGCTGGTCTCAAGCGTTTCTGAGACTAATCACTCGGCTGGAAAATTTCAACTCATTATGCAGAGCGATGGGAACTTGGTTCAATACCCGATAGATGTTGCAAAACCAGAAACTGCTTACTGGAATACTTCCACATTCACTGCTGGAGCGACTGTGAGTATCTACCGTTTGACCATAGATGCAGATGGTATATTGCGGTTGTATTCTAGCAGTTCGGATCAGAATGGTGATTGGACAGTGGAGTGGTCACCAACCACAAATAGGTGCTATAATATCATTGCGTTGGAAGATATTACATGGGAAGACGACCCCTATTCTGTTCTCTCCATGACGAGACAGGCTTGCATAGAGAACTGCTTGAGTGACGGTAACTGCGAAGCCGCACTGTACAAAAACCAGCAGTGCAGAAAACAAACGCTTCCATTAAGATTTGGGAGTCAAGAAGGCGGAGTCACAACCTTATTCAAAGTAGGTAATTTTAGTTCGGTAGGCAAAGAAAGCAGGAAGGAGCTGCGAATAATTGTCATCCTAAGCACAAGCATTTCATTTTTCCTAGCAATCTCCGGTGTTGTTATTTACAGGTACGCATTCAAAAGGGTCTCGAATCAGGGAAATGATAGATGGGCGGAAGATGTCGCTCTACGACCATTCACGTACCATGAGCTTGAAAAAGCAACAAATGGGTTCAGGGATGAAGTGGGGAAAGGAGCTTTTGGAACACCAATATGGGAGGAAAGAATTGAAATAGCCCTGAGTGTAGCCAGAGGCATCCTCTATCTGCACGAGGAGTGTGAAACCCAGATCATCCACTGCGACATAAAACCCGAAAACATTCTAATGGACGAGAAAGGGTGCGCAAAAATTGCAGATTTTGGGTTGGCAAAGCTGCTGATGCCCAACCAGACCAGGACCTACACAGGAATAAGAGGAACAAGGGGCTATGTTGCACCAGAATGGCACAGGAACTTGCCTATAACGGTAAAAGCAGATGTCTACAGCTTCGGGATCATGTTGATGGAAATCATTTGCTGTCGAAGGAGCTTAGACATGGATGTTTCGGAGAATGAAGTAGTACTTGTAGACTATGTGTACGACTGCTTCGAGGCAAGAGAGCTGGACAAGCTGGTGCGCGATGAAGAGGTGGATGGGATGAAACTTCAACGGATGGTGAAGGTGGGGCTTTGGTGCATTCAGGACGAGCCATCGGTTCGCCCTCTGATGAAGAAGGTGGTGCTTATGATGGAAGGGACAGTAGACATACCAGCTCCTCCTAGAGCTTCCTTTGCTAGTTCCATGTCTAGAGAGGCTCATAACTAA 1794 45.99 MVVIILFLLFISEFSTTTGQLGNSSITLGSSLSPTGPSNWSSHSGQFAFGFYQKGKGYAVGIWFNRISRRTVIWTANRDAAPLSRDVQLIFTSDGKLILQQNQGESISIVDRDLPPASSASMLDDGNFVLKNSSSSVIWQSFDTPTDTILPGQPLLAGQKLVSSVSETNHSAGKFQLIMQSDGNLVQYPIDVAKPETAYWNTSTFTAGATVSIYRLTIDADGILRLYSSSSDQNGDWTVEWSPTTNRCYNIIALEDITWEDDPYSVLSMTRQACIENCLSDGNCEAALYKNQQCRKQTLPLRFGSQEGGVTTLFKVGNFSSVGKESRKELRIIVILSTSISFFLAISGVVIYRYAFKRVSNQGNDRWAEDVALRPFTYHELEKATNGFRDEVGKGAFGTPIWEERIEIALSVARGILYLHEECETQIIHCDIKPENILMDEKGCAKIADFGLAKLLMPNQTRTYTGIRGTRGYVAPEWHRNLPITVKADVYSFGIMLMEIICCRRSLDMDVSENEVVLVDYVYDCFEARELDKLVRDEEVDGMKLQRMVKVGLWCIQDEPSVRPLMKKVVLMMEGTVDIPAPPRASFASSMSREAHN* 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 14207945 14210222 + Vvi18g1252 Vvi18g1252 780955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1252 597 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 247 399 - -
Vvi18g1252 597 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 212 249 - -
Vvi18g1252 597 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 400 591 - -
Vvi18g1252 597 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 213 - -
Vvi18g1252 597 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 204 IPR036426 -
Vvi18g1252 597 Pfam D-mannose binding lectin 71 155 IPR001480 -
Vvi18g1252 597 SMART blect_4 19 145 IPR001480 -
Vvi18g1252 597 SUPERFAMILY Protein kinase-like (PK-like) 402 573 IPR011009 -
Vvi18g1252 597 Gene3D - 20 142 IPR036426 -
Vvi18g1252 597 Pfam Protein kinase domain 405 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1252 597 CDD B_lectin 40 145 IPR001480 -
Vvi18g1252 597 SUPERFAMILY alpha-D-mannose-specific plant lectins 166 250 IPR036426 -
Vvi18g1252 597 Gene3D Transferase(Phosphotransferase) domain 1 397 579 - -
Vvi18g1252 597 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1 400 591 - -
Vvi18g1252 597 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1 212 249 - -
Vvi18g1252 597 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1 1 213 - -
Vvi18g1252 597 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1 247 399 - -
Vvi18g1252 597 ProSiteProfiles Protein kinase domain profile. 199 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1252 597 Gene3D - 143 234 IPR036426 -
Vvi18g1252 597 SMART serkin_6 308 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1252 597 ProSiteProfiles Bulb-type lectin domain profile. 23 143 IPR001480 -
Vvi18g1252 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1252 - - - vvi:100247883 759.985
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi4g1261 Vvi18g1252 ECH
Vvi4g1259 Vvi18g1252 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1252 Blo01g01333 . . . . . . . . Cmo12g00289 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000157 2 9 11 4 5 1 3 7 6 4 4 7 6 6 11 6 7 10 2 8 10 8 2 10 9 9 7 5 3 9 191
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76345 PF00069 Pkinase 4.70E-28 CL0016 Vvi PK