Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1253 ATGTACAATTCGTGTATATTTTTTGGGCTCGCAGAGGAGAGGACAGCTAGGGTTTCAGCAAAATCCCAATTCCACCATCGCAGAAGACCTGGGATGGCGGATAGGTTCTGGAGTAGGCAATACTTTGGCGTGCCCAAGCGGCCTCGATCAGACTATGATCTCCCATATTCTGGATTGCCTTCAGGCAATGAGGTCCATAATTATTTAGTTCAAGGTGATGATCTTGGTGGCCCCCGATCTGTAAAGGACTCAAAGACTGTTGGATTGGCATATGACCAATATTTCCAGGATATTCCTTCTTTTACTTCTGGAGCAGCTAGTGATTTTCGTGGGGTTGGGTTAGGAACAGCAACTGGTGAAGCAATATCTGGTCTTTCAATTTCTGGTCCTGCTGTTATGGATCATTTGGAGGCCCTGGATTCTGATCTACCACCAAGTGGTCAAGGCAGGCGTTTTGGTCATCAGCTGGATGCAATTATCAGACCAAGCCGGGAAACGGCTCCTCTACCTCCTGATGCATCCAGCACTCTTTATGTTGAGGGGCTTCCTCCTGACAGCACAAGGAGGGAAGTAGCTCATATTTTTCGCCCATTTGTGGGGTATAAAGAAGTAAGACTCGTGAGCAAAGAATCCAAGCATCGTGGTAGAGATCCTCTTGTCCTTTGTTTCGTGGATTTTACAAGCCCAGCCTGTGCTGCAACTGCATTGAGTGCTTTGCAAGGTTATAAGATCAGCGAACATGATCGTGATTCTGCCCAAATGAGATTGCAGTTTTCTCAGTACCCAGATCCAAGGTCTGGCTCTGGATCCCGTGGGAAGCGCAAAACAAGCTTCAAGAGAGGGCGCCCAAGCAGAATGAAGTCTCATGTACTTCGCTGA 879 47.55 MYNSCIFFGLAEERTARVSAKSQFHHRRRPGMADRFWSRQYFGVPKRPRSDYDLPYSGLPSGNEVHNYLVQGDDLGGPRSVKDSKTVGLAYDQYFQDIPSFTSGAASDFRGVGLGTATGEAISGLSISGPAVMDHLEALDSDLPPSGQGRRFGHQLDAIIRPSRETAPLPPDASSTLYVEGLPPDSTRREVAHIFRPFVGYKEVRLVSKESKHRGRDPLVLCFVDFTSPACAATALSALQGYKISEHDRDSAQMRLQFSQYPDPRSGSGSRGKRKTSFKRGRPSRMKSHVLR* 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 14210515 14227768 + Vvi18g1253 Vvi18g1253 780956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1253 292 SUPERFAMILY RNA-binding domain, RBD 156 271 IPR035979 GO:0003676
Vvi18g1253 292 SMART rrm1_1 176 253 IPR000504 GO:0003723
Vvi18g1253 292 MobiDBLite consensus disorder prediction 272 292 - -
Vvi18g1253 292 MobiDBLite consensus disorder prediction 259 292 - -
Vvi18g1253 292 CDD RRM_RBPMS_like 175 257 - -
Vvi18g1253 292 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 39 274 - -
Vvi18g1253 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 246 IPR000504 GO:0003723
Vvi18g1253 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 261 IPR000504 GO:0003723
Vvi18g1253 292 Gene3D - 171 261 IPR012677 -
Vvi18g1253 292 PANTHER NUCLEAR SPECKLE RNA-BINDING PROTEIN A-RELATED 39 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1253 - - - vvi:100242739 517.309
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1253 . . . . . . . . Cmo04g02552 Cmo15g00618 . . . . Sed11g1337 . Cpe13g00671 Bhi04g01799 Tan11g1166 Cmetu03g0441 . . . . Cla08g00678 Cam08g1108 Cec08g0694 Cco08g0802 Clacu08g0814 . Cre08g0618 . . Cone17ag0793 Cone20ag0389 . . . Cme03g00377 Blo17g00216 . . Bda13g01524 . Bpe14g00337 . Bma02g00274 . . . . . Car04g02349 Car15g00561 Cpe01g02109 . . . . . . . . . . . . . . . Lsi08g00536 . Chy03g00541 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003751 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 2 3 1 1 1 1 1 2 5 1 46